Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03084

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03082 and H281DRAFT_03083 are separated by 93 nucleotidesH281DRAFT_03083 and H281DRAFT_03084 are separated by 348 nucleotidesH281DRAFT_03084 and H281DRAFT_03085 are separated by 213 nucleotidesH281DRAFT_03085 and H281DRAFT_03086 are separated by 115 nucleotides H281DRAFT_03082: H281DRAFT_03082 - transcriptional regulator, LysR family, at 111,216 to 112,130 _03082 H281DRAFT_03083: H281DRAFT_03083 - Redoxin, at 112,224 to 112,775 _03083 H281DRAFT_03084: H281DRAFT_03084 - Cytochrome c biogenesis protein CcdA, at 113,124 to 114,920 _03084 H281DRAFT_03085: H281DRAFT_03085 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 115,134 to 115,526 _03085 H281DRAFT_03086: H281DRAFT_03086 - protein of unknown function (DUF4410), at 115,642 to 116,409 _03086 Position (kb) 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.349 kb on + strand, within H281DRAFT_03083at 112.551 kb on - strandat 112.558 kb on + strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.791 kb on + strandat 113.062 kb on + strandat 113.063 kb on - strandat 113.134 kb on + strandat 113.917 kb on + strand, within H281DRAFT_03084at 113.917 kb on + strand, within H281DRAFT_03084at 113.918 kb on - strand, within H281DRAFT_03084at 114.066 kb on + strand, within H281DRAFT_03084at 114.089 kb on + strand, within H281DRAFT_03084at 114.282 kb on + strand, within H281DRAFT_03084at 114.283 kb on - strand, within H281DRAFT_03084at 114.283 kb on - strand, within H281DRAFT_03084at 114.298 kb on - strand, within H281DRAFT_03084at 114.558 kb on + strand, within H281DRAFT_03084at 114.822 kb on + strandat 114.908 kb on + strandat 114.908 kb on + strandat 114.909 kb on - strandat 114.909 kb on - strandat 114.909 kb on - strandat 115.106 kb on + strandat 115.106 kb on + strandat 115.209 kb on + strand, within H281DRAFT_03085at 115.210 kb on - strand, within H281DRAFT_03085at 115.228 kb on + strand, within H281DRAFT_03085at 115.253 kb on + strand, within H281DRAFT_03085at 115.254 kb on - strand, within H281DRAFT_03085at 115.304 kb on - strand, within H281DRAFT_03085at 115.360 kb on - strand, within H281DRAFT_03085at 115.368 kb on - strand, within H281DRAFT_03085at 115.373 kb on + strand, within H281DRAFT_03085at 115.807 kb on - strand, within H281DRAFT_03086at 115.917 kb on + strand, within H281DRAFT_03086at 115.919 kb on + strand, within H281DRAFT_03086at 115.919 kb on + strand, within H281DRAFT_03086

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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112,349 + H281DRAFT_03083 0.23 +0.0
112,551 - +2.2
112,558 + H281DRAFT_03083 0.61 -0.3
112,559 - H281DRAFT_03083 0.61 +0.0
112,559 - H281DRAFT_03083 0.61 +0.5
112,559 - H281DRAFT_03083 0.61 +1.1
112,559 - H281DRAFT_03083 0.61 +1.0
112,791 + -0.3
113,062 + -0.6
113,063 - +0.6
113,134 + -0.6
113,917 + H281DRAFT_03084 0.44 +0.6
113,917 + H281DRAFT_03084 0.44 -2.4
113,918 - H281DRAFT_03084 0.44 +0.4
114,066 + H281DRAFT_03084 0.52 -1.0
114,089 + H281DRAFT_03084 0.54 -1.6
114,282 + H281DRAFT_03084 0.64 +1.0
114,283 - H281DRAFT_03084 0.64 -0.0
114,283 - H281DRAFT_03084 0.64 -0.7
114,298 - H281DRAFT_03084 0.65 -0.1
114,558 + H281DRAFT_03084 0.80 +0.2
114,822 + +0.6
114,908 + +0.3
114,908 + -0.4
114,909 - +0.4
114,909 - +0.7
114,909 - +0.2
115,106 + +0.6
115,106 + -0.3
115,209 + H281DRAFT_03085 0.19 -0.3
115,210 - H281DRAFT_03085 0.19 +1.2
115,228 + H281DRAFT_03085 0.24 -0.5
115,253 + H281DRAFT_03085 0.30 -0.2
115,254 - H281DRAFT_03085 0.31 -0.5
115,304 - H281DRAFT_03085 0.43 -2.9
115,360 - H281DRAFT_03085 0.58 +1.5
115,368 - H281DRAFT_03085 0.60 -1.4
115,373 + H281DRAFT_03085 0.61 -1.7
115,807 - H281DRAFT_03086 0.21 -2.9
115,917 + H281DRAFT_03086 0.36 +0.3
115,919 + H281DRAFT_03086 0.36 -0.3
115,919 + H281DRAFT_03086 0.36 -2.8

Or see this region's nucleotide sequence