Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02604

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02603 and H281DRAFT_02604 are separated by 707 nucleotidesH281DRAFT_02604 and H281DRAFT_02605 are separated by 585 nucleotides H281DRAFT_02603: H281DRAFT_02603 - Outer membrane protein (porin), at 178,649 to 179,776 _02603 H281DRAFT_02604: H281DRAFT_02604 - hypothetical protein, at 180,484 to 180,786 _02604 H281DRAFT_02605: H281DRAFT_02605 - Glycosyltransferase involved in cell wall bisynthesis, at 181,372 to 182,343 _02605 Position (kb) 180 181Strain fitness (log2 ratio) -1 0 1 2at 179.511 kb on - strandat 179.540 kb on + strand, within H281DRAFT_02603at 179.642 kb on + strand, within H281DRAFT_02603at 179.904 kb on + strandat 180.308 kb on + strandat 180.383 kb on - strandat 180.422 kb on - strandat 180.422 kb on - strandat 180.585 kb on - strand, within H281DRAFT_02604at 180.956 kb on + strandat 180.956 kb on + strandat 180.957 kb on - strandat 180.966 kb on + strandat 181.052 kb on + strandat 181.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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179,511 - +0.2
179,540 + H281DRAFT_02603 0.79 +0.6
179,642 + H281DRAFT_02603 0.88 -0.3
179,904 + -0.4
180,308 + +1.1
180,383 - +0.2
180,422 - +0.7
180,422 - +0.1
180,585 - H281DRAFT_02604 0.33 -0.0
180,956 + +1.9
180,956 + +0.7
180,957 - -0.3
180,966 + -1.5
181,052 + -0.1
181,104 + +0.7

Or see this region's nucleotide sequence