Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02427 and H281DRAFT_02428 overlap by 4 nucleotides H281DRAFT_02428 and H281DRAFT_02429 are separated by 17 nucleotides H281DRAFT_02429 and H281DRAFT_02430 are separated by 17 nucleotides H281DRAFT_02430 and H281DRAFT_02431 are separated by 16 nucleotides
H281DRAFT_02427: H281DRAFT_02427 - Choline dehydrogenase, at 599,132 to 600,736
_02427
H281DRAFT_02428: H281DRAFT_02428 - hypothetical protein, at 600,733 to 601,155
_02428
H281DRAFT_02429: H281DRAFT_02429 - 3-oxoacyl-[acyl-carrier protein] reductase, at 601,173 to 601,916
_02429
H281DRAFT_02430: H281DRAFT_02430 - transketolase subunit A, at 601,934 to 602,755
_02430
H281DRAFT_02431: H281DRAFT_02431 - transketolase subunit B, at 602,772 to 603,752
_02431
Position (kb) 601
602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.176 kb on + strand, within H281DRAFT_02427 at 600.316 kb on + strand, within H281DRAFT_02427 at 600.631 kb on + strand at 600.632 kb on - strand at 600.854 kb on + strand, within H281DRAFT_02428 at 600.971 kb on + strand, within H281DRAFT_02428 at 600.971 kb on + strand, within H281DRAFT_02428 at 600.971 kb on + strand, within H281DRAFT_02428 at 600.972 kb on - strand, within H281DRAFT_02428 at 600.972 kb on - strand, within H281DRAFT_02428 at 600.972 kb on - strand, within H281DRAFT_02428 at 600.972 kb on - strand, within H281DRAFT_02428 at 600.972 kb on - strand, within H281DRAFT_02428 at 601.012 kb on + strand, within H281DRAFT_02428 at 601.121 kb on - strand at 601.180 kb on + strand at 601.181 kb on - strand at 601.432 kb on + strand, within H281DRAFT_02429 at 601.433 kb on - strand, within H281DRAFT_02429 at 601.752 kb on + strand, within H281DRAFT_02429 at 601.753 kb on - strand, within H281DRAFT_02429 at 601.913 kb on - strand at 601.933 kb on + strand at 601.933 kb on + strand at 601.933 kb on + strand at 601.934 kb on - strand at 602.064 kb on - strand, within H281DRAFT_02430 at 602.064 kb on - strand, within H281DRAFT_02430 at 602.122 kb on + strand, within H281DRAFT_02430 at 602.146 kb on - strand, within H281DRAFT_02430 at 602.357 kb on + strand, within H281DRAFT_02430 at 602.357 kb on + strand, within H281DRAFT_02430 at 602.357 kb on + strand, within H281DRAFT_02430 at 602.357 kb on + strand, within H281DRAFT_02430 at 602.357 kb on + strand, within H281DRAFT_02430 at 602.556 kb on + strand, within H281DRAFT_02430 at 602.638 kb on + strand, within H281DRAFT_02430 at 602.715 kb on - strand at 602.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 600,176 + H281DRAFT_02427 0.65 -0.5 600,316 + H281DRAFT_02427 0.74 +1.4 600,631 + +1.1 600,632 - -1.5 600,854 + H281DRAFT_02428 0.29 +2.9 600,971 + H281DRAFT_02428 0.56 +0.4 600,971 + H281DRAFT_02428 0.56 +1.0 600,971 + H281DRAFT_02428 0.56 +0.2 600,972 - H281DRAFT_02428 0.57 -2.3 600,972 - H281DRAFT_02428 0.57 +1.6 600,972 - H281DRAFT_02428 0.57 -1.2 600,972 - H281DRAFT_02428 0.57 +0.6 600,972 - H281DRAFT_02428 0.57 +1.0 601,012 + H281DRAFT_02428 0.66 -0.1 601,121 - +0.4 601,180 + -0.9 601,181 - -0.7 601,432 + H281DRAFT_02429 0.35 +3.5 601,433 - H281DRAFT_02429 0.35 +1.1 601,752 + H281DRAFT_02429 0.78 +1.2 601,753 - H281DRAFT_02429 0.78 -2.3 601,913 - +0.7 601,933 + -0.4 601,933 + -0.1 601,933 + +0.2 601,934 - -0.6 602,064 - H281DRAFT_02430 0.16 +0.4 602,064 - H281DRAFT_02430 0.16 -1.1 602,122 + H281DRAFT_02430 0.23 +0.3 602,146 - H281DRAFT_02430 0.26 +0.3 602,357 + H281DRAFT_02430 0.51 -0.3 602,357 + H281DRAFT_02430 0.51 -0.0 602,357 + H281DRAFT_02430 0.51 +0.8 602,357 + H281DRAFT_02430 0.51 +0.9 602,357 + H281DRAFT_02430 0.51 -0.4 602,556 + H281DRAFT_02430 0.76 +0.5 602,638 + H281DRAFT_02430 0.86 +0.8 602,715 - +0.9 602,715 - -1.3
Or see this region's nucleotide sequence