Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02355

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02354 and H281DRAFT_02355 are separated by 4 nucleotidesH281DRAFT_02355 and H281DRAFT_02356 overlap by 4 nucleotides H281DRAFT_02354: H281DRAFT_02354 - general secretion pathway protein F, at 510,749 to 511,966 _02354 H281DRAFT_02355: H281DRAFT_02355 - type II secretion system protein E (GspE), at 511,971 to 513,530 _02355 H281DRAFT_02356: H281DRAFT_02356 - general secretion pathway protein D, at 513,527 to 515,878 _02356 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 510.985 kb on + strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354at 511.257 kb on + strand, within H281DRAFT_02354at 511.258 kb on - strand, within H281DRAFT_02354at 511.258 kb on - strand, within H281DRAFT_02354at 511.395 kb on + strand, within H281DRAFT_02354at 511.395 kb on + strand, within H281DRAFT_02354at 511.396 kb on - strand, within H281DRAFT_02354at 511.450 kb on - strand, within H281DRAFT_02354at 511.500 kb on + strand, within H281DRAFT_02354at 511.500 kb on + strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.541 kb on - strand, within H281DRAFT_02354at 511.569 kb on + strand, within H281DRAFT_02354at 511.668 kb on + strand, within H281DRAFT_02354at 511.669 kb on - strand, within H281DRAFT_02354at 511.972 kb on + strandat 511.973 kb on - strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.106 kb on - strandat 512.152 kb on + strand, within H281DRAFT_02355at 512.152 kb on + strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.295 kb on + strand, within H281DRAFT_02355at 512.295 kb on + strand, within H281DRAFT_02355at 512.296 kb on - strand, within H281DRAFT_02355at 512.317 kb on + strand, within H281DRAFT_02355at 512.318 kb on - strand, within H281DRAFT_02355at 512.372 kb on + strand, within H281DRAFT_02355at 512.372 kb on + strand, within H281DRAFT_02355at 512.381 kb on + strandat 512.382 kb on - strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.561 kb on - strand, within H281DRAFT_02355at 512.626 kb on + strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.859 kb on - strand, within H281DRAFT_02355at 512.972 kb on + strand, within H281DRAFT_02355at 512.972 kb on + strand, within H281DRAFT_02355at 513.209 kb on - strand, within H281DRAFT_02355at 513.209 kb on - strand, within H281DRAFT_02355at 513.248 kb on + strand, within H281DRAFT_02355at 513.249 kb on - strand, within H281DRAFT_02355at 513.249 kb on - strand, within H281DRAFT_02355at 513.524 kb on + strandat 513.524 kb on + strandat 513.524 kb on + strandat 513.621 kb on + strandat 513.823 kb on + strand, within H281DRAFT_02356at 513.823 kb on + strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.825 kb on + strandat 513.825 kb on + strand, within H281DRAFT_02356at 513.826 kb on - strand, within H281DRAFT_02356at 513.996 kb on + strand, within H281DRAFT_02356at 513.996 kb on + strand, within H281DRAFT_02356at 513.997 kb on - strand, within H281DRAFT_02356at 513.997 kb on - strand, within H281DRAFT_02356at 514.000 kb on + strand, within H281DRAFT_02356at 514.000 kb on + strand, within H281DRAFT_02356at 514.143 kb on + strand, within H281DRAFT_02356at 514.221 kb on + strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.266 kb on + strand, within H281DRAFT_02356at 514.267 kb on - strand, within H281DRAFT_02356at 514.267 kb on - strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strandat 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strandat 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.339 kb on + strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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510,985 + H281DRAFT_02354 0.19 +0.9
510,986 - H281DRAFT_02354 0.19 +0.1
510,986 - H281DRAFT_02354 0.19 -1.6
511,257 + H281DRAFT_02354 0.42 -0.8
511,258 - H281DRAFT_02354 0.42 +1.3
511,258 - H281DRAFT_02354 0.42 -0.1
511,395 + H281DRAFT_02354 0.53 -3.0
511,395 + H281DRAFT_02354 0.53 +0.6
511,396 - H281DRAFT_02354 0.53 -1.3
511,450 - H281DRAFT_02354 0.58 -2.4
511,500 + H281DRAFT_02354 0.62 +1.3
511,500 + H281DRAFT_02354 0.62 -0.8
511,501 - H281DRAFT_02354 0.62 -0.7
511,501 - H281DRAFT_02354 0.62 -2.2
511,501 - H281DRAFT_02354 0.62 -0.7
511,501 - H281DRAFT_02354 0.62 +0.1
511,541 - H281DRAFT_02354 0.65 -2.2
511,569 + H281DRAFT_02354 0.67 -2.6
511,668 + H281DRAFT_02354 0.75 -2.0
511,669 - H281DRAFT_02354 0.76 -2.0
511,972 + -1.1
511,973 - -0.3
512,105 + -2.6
512,105 + -1.6
512,105 + -0.1
512,105 + -1.0
512,106 - -3.8
512,152 + H281DRAFT_02355 0.12 -2.3
512,152 + H281DRAFT_02355 0.12 +0.0
512,153 - H281DRAFT_02355 0.12 -0.1
512,153 - H281DRAFT_02355 0.12 -0.8
512,153 - H281DRAFT_02355 0.12 -0.8
512,295 + H281DRAFT_02355 0.21 +0.2
512,295 + H281DRAFT_02355 0.21 -2.2
512,296 - H281DRAFT_02355 0.21 -0.4
512,317 + H281DRAFT_02355 0.22 -1.3
512,318 - H281DRAFT_02355 0.22 -0.8
512,372 + H281DRAFT_02355 0.26 -1.0
512,372 + H281DRAFT_02355 0.26 -1.5
512,381 + -0.7
512,382 - H281DRAFT_02355 0.26 -1.9
512,560 + H281DRAFT_02355 0.38 -0.7
512,560 + H281DRAFT_02355 0.38 -0.9
512,560 + H281DRAFT_02355 0.38 -0.3
512,561 - H281DRAFT_02355 0.38 -0.6
512,626 + H281DRAFT_02355 0.42 -0.1
512,627 - H281DRAFT_02355 0.42 -0.9
512,627 - H281DRAFT_02355 0.42 -1.0
512,627 - H281DRAFT_02355 0.42 -0.2
512,859 - H281DRAFT_02355 0.57 -0.5
512,972 + H281DRAFT_02355 0.64 -3.0
512,972 + H281DRAFT_02355 0.64 -0.9
513,209 - H281DRAFT_02355 0.79 +0.6
513,209 - H281DRAFT_02355 0.79 -3.7
513,248 + H281DRAFT_02355 0.82 -0.6
513,249 - H281DRAFT_02355 0.82 -1.3
513,249 - H281DRAFT_02355 0.82 -0.2
513,524 + -0.8
513,524 + +0.2
513,524 + +0.5
513,621 + +2.4
513,823 + H281DRAFT_02356 0.13 -4.4
513,823 + H281DRAFT_02356 0.13 -0.5
513,824 - H281DRAFT_02356 0.13 -0.0
513,824 - H281DRAFT_02356 0.13 -1.3
513,824 - H281DRAFT_02356 0.13 -0.5
513,824 - H281DRAFT_02356 0.13 +1.2
513,824 - H281DRAFT_02356 0.13 +0.3
513,824 - H281DRAFT_02356 0.13 -1.2
513,824 - H281DRAFT_02356 0.13 -2.7
513,824 - H281DRAFT_02356 0.13 -1.6
513,824 - H281DRAFT_02356 0.13 +0.5
513,824 - H281DRAFT_02356 0.13 -1.9
513,825 + -0.5
513,825 + H281DRAFT_02356 0.13 +0.2
513,826 - H281DRAFT_02356 0.13 -1.5
513,996 + H281DRAFT_02356 0.20 -0.2
513,996 + H281DRAFT_02356 0.20 +0.1
513,997 - H281DRAFT_02356 0.20 -0.3
513,997 - H281DRAFT_02356 0.20 -2.4
514,000 + H281DRAFT_02356 0.20 -2.2
514,000 + H281DRAFT_02356 0.20 +0.6
514,143 + H281DRAFT_02356 0.26 -3.5
514,221 + H281DRAFT_02356 0.30 -0.5
514,222 - H281DRAFT_02356 0.30 +0.4
514,222 - H281DRAFT_02356 0.30 -1.4
514,222 - H281DRAFT_02356 0.30 -3.0
514,266 + H281DRAFT_02356 0.31 -1.0
514,267 - H281DRAFT_02356 0.31 -3.3
514,267 - H281DRAFT_02356 0.31 -2.6
514,282 + H281DRAFT_02356 0.32 +0.1
514,282 + H281DRAFT_02356 0.32 -1.0
514,282 + H281DRAFT_02356 0.32 -0.7
514,282 + H281DRAFT_02356 0.32 -1.1
514,282 + H281DRAFT_02356 0.32 -2.6
514,286 + H281DRAFT_02356 0.32 -1.8
514,286 + H281DRAFT_02356 0.32 -1.2
514,286 + H281DRAFT_02356 0.32 -0.3
514,286 + H281DRAFT_02356 0.32 -1.2
514,286 + H281DRAFT_02356 0.32 -2.0
514,286 + H281DRAFT_02356 0.32 +0.5
514,286 + H281DRAFT_02356 0.32 -2.8
514,286 + H281DRAFT_02356 0.32 +0.0
514,286 + H281DRAFT_02356 0.32 -1.4
514,286 + H281DRAFT_02356 0.32 +1.2
514,286 + H281DRAFT_02356 0.32 -1.8
514,286 + H281DRAFT_02356 0.32 -0.4
514,286 + H281DRAFT_02356 0.32 +0.5
514,286 + H281DRAFT_02356 0.32 -1.0
514,286 + -0.1
514,286 + H281DRAFT_02356 0.32 -0.2
514,286 + H281DRAFT_02356 0.32 -2.2
514,287 - H281DRAFT_02356 0.32 -2.3
514,287 - H281DRAFT_02356 0.32 -0.9
514,287 - H281DRAFT_02356 0.32 -0.8
514,287 - H281DRAFT_02356 0.32 -0.3
514,287 - H281DRAFT_02356 0.32 -0.6
514,287 - H281DRAFT_02356 0.32 -0.8
514,287 - H281DRAFT_02356 0.32 -1.1
514,287 - H281DRAFT_02356 0.32 -3.5
514,287 - H281DRAFT_02356 0.32 -1.6
514,287 - H281DRAFT_02356 0.32 -1.0
514,287 - H281DRAFT_02356 0.32 -0.3
514,287 - H281DRAFT_02356 0.32 +0.2
514,287 - H281DRAFT_02356 0.32 -1.8
514,287 - -1.7
514,287 - H281DRAFT_02356 0.32 -2.6
514,287 - H281DRAFT_02356 0.32 -1.3
514,287 - H281DRAFT_02356 0.32 -0.1
514,339 + H281DRAFT_02356 0.35 +0.4
514,340 - H281DRAFT_02356 0.35 -1.6
514,340 - H281DRAFT_02356 0.35 -1.7
514,340 - H281DRAFT_02356 0.35 +1.1
514,340 - H281DRAFT_02356 0.35 -2.6

Or see this region's nucleotide sequence