Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02127 and H281DRAFT_02128 are separated by 396 nucleotides H281DRAFT_02128 and H281DRAFT_02129 are separated by 84 nucleotides
H281DRAFT_02127: H281DRAFT_02127 - methyl-accepting chemotaxis protein, at 260,689 to 262,254
_02127
H281DRAFT_02128: H281DRAFT_02128 - hypothetical protein, at 262,651 to 263,289
_02128
H281DRAFT_02129: H281DRAFT_02129 - diguanylate cyclase (GGDEF) domain-containing protein, at 263,374 to 264,912
_02129
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.702 kb on - strand, within H281DRAFT_02127 at 261.870 kb on + strand, within H281DRAFT_02127 at 261.870 kb on + strand, within H281DRAFT_02127 at 261.870 kb on + strand, within H281DRAFT_02127 at 261.871 kb on - strand, within H281DRAFT_02127 at 261.948 kb on - strand, within H281DRAFT_02127 at 261.957 kb on - strand at 262.031 kb on + strand, within H281DRAFT_02127 at 262.095 kb on - strand, within H281DRAFT_02127 at 262.109 kb on + strand at 262.109 kb on + strand at 262.110 kb on - strand at 262.110 kb on - strand at 262.377 kb on + strand at 262.378 kb on - strand at 262.407 kb on + strand at 262.474 kb on + strand at 262.502 kb on - strand at 262.554 kb on + strand at 262.554 kb on + strand at 262.555 kb on - strand at 262.555 kb on - strand at 262.555 kb on - strand at 262.574 kb on + strand at 262.574 kb on + strand at 262.694 kb on + strand at 262.758 kb on - strand, within H281DRAFT_02128 at 263.263 kb on - strand at 263.428 kb on + strand at 263.428 kb on + strand at 263.477 kb on + strand at 263.478 kb on - strand at 263.478 kb on - strand at 263.478 kb on - strand at 263.478 kb on - strand at 263.539 kb on - strand, within H281DRAFT_02129 at 263.545 kb on + strand, within H281DRAFT_02129 at 263.553 kb on + strand at 263.784 kb on - strand, within H281DRAFT_02129 at 264.068 kb on + strand, within H281DRAFT_02129 at 264.068 kb on + strand, within H281DRAFT_02129 at 264.069 kb on - strand, within H281DRAFT_02129 at 264.069 kb on - strand, within H281DRAFT_02129 at 264.069 kb on - strand, within H281DRAFT_02129 at 264.069 kb on - strand, within H281DRAFT_02129 at 264.069 kb on - strand, within H281DRAFT_02129 at 264.110 kb on + strand, within H281DRAFT_02129 at 264.111 kb on - strand, within H281DRAFT_02129 at 264.283 kb on + strand, within H281DRAFT_02129 at 264.283 kb on + strand, within H281DRAFT_02129
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 261,702 - H281DRAFT_02127 0.65 +0.5 261,870 + H281DRAFT_02127 0.75 -0.3 261,870 + H281DRAFT_02127 0.75 +0.2 261,870 + H281DRAFT_02127 0.75 -0.0 261,871 - H281DRAFT_02127 0.75 -1.5 261,948 - H281DRAFT_02127 0.80 -0.2 261,957 - -0.8 262,031 + H281DRAFT_02127 0.86 -0.3 262,095 - H281DRAFT_02127 0.90 +1.6 262,109 + -0.1 262,109 + +0.2 262,110 - -0.8 262,110 - +0.6 262,377 + -1.0 262,378 - +0.5 262,407 + -0.6 262,474 + -1.1 262,502 - +0.8 262,554 + -0.6 262,554 + -0.3 262,555 - +0.1 262,555 - +0.4 262,555 - +0.2 262,574 + -1.7 262,574 + +0.3 262,694 + -3.3 262,758 - H281DRAFT_02128 0.17 -0.0 263,263 - +1.0 263,428 + -0.3 263,428 + +2.0 263,477 + -0.0 263,478 - +0.1 263,478 - +0.1 263,478 - -1.2 263,478 - -0.2 263,539 - H281DRAFT_02129 0.11 -1.0 263,545 + H281DRAFT_02129 0.11 +0.5 263,553 + -0.0 263,784 - H281DRAFT_02129 0.27 +0.3 264,068 + H281DRAFT_02129 0.45 -0.4 264,068 + H281DRAFT_02129 0.45 +0.4 264,069 - H281DRAFT_02129 0.45 -0.8 264,069 - H281DRAFT_02129 0.45 -0.7 264,069 - H281DRAFT_02129 0.45 -1.6 264,069 - H281DRAFT_02129 0.45 +0.3 264,069 - H281DRAFT_02129 0.45 -1.4 264,110 + H281DRAFT_02129 0.48 +0.7 264,111 - H281DRAFT_02129 0.48 -0.1 264,283 + H281DRAFT_02129 0.59 +1.1 264,283 + H281DRAFT_02129 0.59 -0.2
Or see this region's nucleotide sequence