Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02112 and H281DRAFT_02113 are separated by 579 nucleotides H281DRAFT_02113 and H281DRAFT_02114 are separated by 569 nucleotides
H281DRAFT_02112: H281DRAFT_02112 - Outer membrane protein (porin), at 239,889 to 240,974
_02112
H281DRAFT_02113: H281DRAFT_02113 - hypothetical protein, at 241,554 to 242,009
_02113
H281DRAFT_02114: H281DRAFT_02114 - solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 242,579 to 243,604
_02114
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 240.643 kb on + strand, within H281DRAFT_02112 at 240.686 kb on - strand, within H281DRAFT_02112 at 240.722 kb on + strand, within H281DRAFT_02112 at 240.723 kb on - strand, within H281DRAFT_02112 at 240.776 kb on - strand, within H281DRAFT_02112 at 240.776 kb on - strand, within H281DRAFT_02112 at 240.865 kb on + strand, within H281DRAFT_02112 at 240.936 kb on - strand at 240.936 kb on - strand at 241.099 kb on + strand at 241.099 kb on + strand at 241.099 kb on + strand at 241.099 kb on + strand at 241.112 kb on - strand at 241.130 kb on + strand at 241.130 kb on + strand at 241.130 kb on + strand at 241.145 kb on - strand at 241.168 kb on + strand at 241.168 kb on + strand at 241.168 kb on + strand at 241.295 kb on - strand at 241.395 kb on + strand at 241.402 kb on + strand at 241.415 kb on - strand at 241.440 kb on - strand at 241.526 kb on + strand at 241.526 kb on + strand at 241.555 kb on + strand at 241.556 kb on - strand at 241.556 kb on - strand at 241.556 kb on - strand at 241.637 kb on + strand, within H281DRAFT_02113 at 241.639 kb on + strand, within H281DRAFT_02113 at 241.639 kb on + strand, within H281DRAFT_02113 at 241.744 kb on + strand, within H281DRAFT_02113 at 241.744 kb on + strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.745 kb on - strand, within H281DRAFT_02113 at 241.871 kb on - strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.885 kb on + strand, within H281DRAFT_02113 at 241.886 kb on - strand, within H281DRAFT_02113 at 241.886 kb on - strand, within H281DRAFT_02113 at 242.136 kb on + strand at 242.141 kb on + strand at 242.142 kb on - strand at 242.142 kb on - strand at 242.178 kb on + strand at 242.198 kb on - strand at 242.198 kb on - strand at 242.241 kb on + strand at 242.241 kb on + strand at 242.253 kb on - strand at 242.264 kb on + strand at 242.330 kb on + strand at 242.330 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.334 kb on + strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.335 kb on - strand at 242.638 kb on - strand at 242.725 kb on - strand, within H281DRAFT_02114 at 242.725 kb on - strand, within H281DRAFT_02114
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 240,643 + H281DRAFT_02112 0.69 +0.3 240,686 - H281DRAFT_02112 0.73 +0.4 240,722 + H281DRAFT_02112 0.77 -0.3 240,723 - H281DRAFT_02112 0.77 -1.3 240,776 - H281DRAFT_02112 0.82 +0.3 240,776 - H281DRAFT_02112 0.82 -0.3 240,865 + H281DRAFT_02112 0.90 +1.7 240,936 - +0.4 240,936 - +0.7 241,099 + +2.1 241,099 + +0.2 241,099 + -3.0 241,099 + -1.1 241,112 - -0.0 241,130 + +0.0 241,130 + -0.4 241,130 + -0.0 241,145 - -2.4 241,168 + -1.1 241,168 + -0.6 241,168 + -0.8 241,295 - -1.4 241,395 + +0.6 241,402 + -0.1 241,415 - -2.1 241,440 - -0.8 241,526 + +0.5 241,526 + +0.2 241,555 + -0.5 241,556 - +0.2 241,556 - -2.4 241,556 - +1.0 241,637 + H281DRAFT_02113 0.18 -0.4 241,639 + H281DRAFT_02113 0.19 -1.1 241,639 + H281DRAFT_02113 0.19 -0.4 241,744 + H281DRAFT_02113 0.42 -0.9 241,744 + H281DRAFT_02113 0.42 -1.8 241,745 - H281DRAFT_02113 0.42 -0.6 241,745 - H281DRAFT_02113 0.42 +0.5 241,745 - H281DRAFT_02113 0.42 +1.6 241,871 - H281DRAFT_02113 0.70 +1.0 241,885 + H281DRAFT_02113 0.73 +0.4 241,885 + H281DRAFT_02113 0.73 +1.4 241,885 + H281DRAFT_02113 0.73 -2.1 241,885 + H281DRAFT_02113 0.73 -0.1 241,885 + H281DRAFT_02113 0.73 -0.2 241,885 + H281DRAFT_02113 0.73 +0.4 241,886 - H281DRAFT_02113 0.73 +0.0 241,886 - H281DRAFT_02113 0.73 -0.6 242,136 + +0.3 242,141 + -0.4 242,142 - -1.7 242,142 - -2.9 242,178 + +0.5 242,198 - -1.2 242,198 - -1.3 242,241 + -0.5 242,241 + +0.3 242,253 - -1.7 242,264 + +0.4 242,330 + +0.1 242,330 + -1.3 242,334 + +0.3 242,334 + +1.0 242,334 + +0.2 242,334 + -0.2 242,334 + -1.6 242,335 - -1.2 242,335 - +0.1 242,335 - +0.0 242,335 - -2.1 242,638 - -1.6 242,725 - H281DRAFT_02114 0.14 -3.2 242,725 - H281DRAFT_02114 0.14 -2.7
Or see this region's nucleotide sequence