Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02047 and H281DRAFT_02048 are separated by 213 nucleotides H281DRAFT_02048 and H281DRAFT_02049 are separated by 13 nucleotides H281DRAFT_02049 and H281DRAFT_02050 are separated by 103 nucleotides
H281DRAFT_02047: H281DRAFT_02047 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 171,553 to 172,236
_02047
H281DRAFT_02048: H281DRAFT_02048 - lipoic acid synthetase, at 172,450 to 173,457
_02048
H281DRAFT_02049: H281DRAFT_02049 - lipoyl(octanoyl) transferase, at 173,471 to 174,166
_02049
H281DRAFT_02050: H281DRAFT_02050 - Protein of unknown function (DUF2917), at 174,270 to 174,596
_02050
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 171.450 kb on - strand at 171.469 kb on + strand at 171.647 kb on + strand, within H281DRAFT_02047 at 171.685 kb on + strand, within H281DRAFT_02047 at 171.736 kb on + strand, within H281DRAFT_02047 at 171.736 kb on + strand, within H281DRAFT_02047 at 171.859 kb on - strand, within H281DRAFT_02047 at 172.061 kb on + strand, within H281DRAFT_02047 at 172.061 kb on + strand, within H281DRAFT_02047 at 172.062 kb on - strand, within H281DRAFT_02047 at 172.108 kb on + strand, within H281DRAFT_02047 at 172.361 kb on + strand at 172.457 kb on - strand at 174.336 kb on - strand, within H281DRAFT_02050
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 171,450 - -0.4 171,469 + -0.2 171,647 + H281DRAFT_02047 0.14 +0.6 171,685 + H281DRAFT_02047 0.19 +0.7 171,736 + H281DRAFT_02047 0.27 +0.1 171,736 + H281DRAFT_02047 0.27 -0.5 171,859 - H281DRAFT_02047 0.45 -1.0 172,061 + H281DRAFT_02047 0.74 +0.0 172,061 + H281DRAFT_02047 0.74 +0.1 172,062 - H281DRAFT_02047 0.74 -1.2 172,108 + H281DRAFT_02047 0.81 -2.3 172,361 + -0.8 172,457 - +0.9 174,336 - H281DRAFT_02050 0.20 +0.7
Or see this region's nucleotide sequence