Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01883 and H281DRAFT_01884 overlap by 4 nucleotides H281DRAFT_01884 and H281DRAFT_01885 are separated by 33 nucleotides
H281DRAFT_01883: H281DRAFT_01883 - putative addiction module antidote protein, CC2985 family, at 801,693 to 801,926
_01883
H281DRAFT_01884: H281DRAFT_01884 - two-component system, chemotaxis family, CheB/CheR fusion protein, at 801,923 to 805,099
_01884
H281DRAFT_01885: H281DRAFT_01885 - DNA-binding transcriptional regulator, LysR family, at 805,133 to 806,029
_01885
Position (kb) 801
802
803
804
805
806 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 801.022 kb on - strand at 801.450 kb on - strand at 801.466 kb on + strand at 801.466 kb on + strand at 801.654 kb on + strand at 801.655 kb on - strand at 801.655 kb on - strand at 801.766 kb on + strand, within H281DRAFT_01883 at 801.957 kb on + strand at 802.154 kb on + strand at 802.154 kb on + strand at 802.155 kb on - strand at 802.155 kb on - strand at 802.179 kb on + strand at 802.584 kb on - strand, within H281DRAFT_01884 at 802.697 kb on + strand, within H281DRAFT_01884 at 802.698 kb on - strand, within H281DRAFT_01884 at 802.698 kb on - strand, within H281DRAFT_01884 at 802.698 kb on - strand, within H281DRAFT_01884 at 802.698 kb on - strand, within H281DRAFT_01884 at 803.087 kb on + strand, within H281DRAFT_01884 at 803.088 kb on - strand, within H281DRAFT_01884 at 803.088 kb on - strand, within H281DRAFT_01884 at 803.193 kb on + strand, within H281DRAFT_01884 at 803.194 kb on - strand, within H281DRAFT_01884 at 803.194 kb on - strand, within H281DRAFT_01884 at 803.198 kb on + strand, within H281DRAFT_01884 at 803.265 kb on - strand, within H281DRAFT_01884 at 803.279 kb on - strand, within H281DRAFT_01884 at 803.482 kb on + strand, within H281DRAFT_01884 at 803.483 kb on - strand, within H281DRAFT_01884 at 803.483 kb on - strand, within H281DRAFT_01884 at 803.540 kb on + strand, within H281DRAFT_01884 at 803.541 kb on - strand, within H281DRAFT_01884 at 803.541 kb on - strand, within H281DRAFT_01884 at 803.565 kb on - strand, within H281DRAFT_01884 at 803.776 kb on + strand, within H281DRAFT_01884 at 803.776 kb on + strand, within H281DRAFT_01884 at 803.776 kb on + strand, within H281DRAFT_01884 at 803.776 kb on + strand, within H281DRAFT_01884 at 803.776 kb on + strand, within H281DRAFT_01884 at 803.777 kb on - strand, within H281DRAFT_01884 at 803.780 kb on + strand, within H281DRAFT_01884 at 803.780 kb on + strand, within H281DRAFT_01884 at 803.781 kb on - strand, within H281DRAFT_01884 at 803.781 kb on - strand, within H281DRAFT_01884 at 803.927 kb on + strand, within H281DRAFT_01884 at 804.067 kb on + strand, within H281DRAFT_01884 at 804.136 kb on + strand, within H281DRAFT_01884 at 804.136 kb on + strand, within H281DRAFT_01884 at 804.738 kb on + strand, within H281DRAFT_01884 at 804.738 kb on + strand, within H281DRAFT_01884 at 804.739 kb on - strand, within H281DRAFT_01884 at 804.739 kb on - strand, within H281DRAFT_01884 at 804.871 kb on - strand at 805.023 kb on + strand at 805.024 kb on - strand at 805.024 kb on - strand at 805.139 kb on - strand at 805.256 kb on - strand, within H281DRAFT_01885 at 805.278 kb on - strand, within H281DRAFT_01885 at 805.521 kb on - strand, within H281DRAFT_01885 at 805.623 kb on + strand, within H281DRAFT_01885 at 805.863 kb on - strand, within H281DRAFT_01885 at 805.914 kb on - strand, within H281DRAFT_01885 at 806.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 801,022 - -0.8 801,450 - +0.2 801,466 + -0.5 801,466 + +0.2 801,654 + -0.1 801,655 - -0.6 801,655 - +0.2 801,766 + H281DRAFT_01883 0.31 -0.6 801,957 + -1.6 802,154 + +1.3 802,154 + +0.3 802,155 - -1.5 802,155 - +0.8 802,179 + -2.5 802,584 - H281DRAFT_01884 0.21 +3.0 802,697 + H281DRAFT_01884 0.24 +0.4 802,698 - H281DRAFT_01884 0.24 +1.2 802,698 - H281DRAFT_01884 0.24 -0.1 802,698 - H281DRAFT_01884 0.24 -1.9 802,698 - H281DRAFT_01884 0.24 -0.4 803,087 + H281DRAFT_01884 0.37 +0.3 803,088 - H281DRAFT_01884 0.37 -0.2 803,088 - H281DRAFT_01884 0.37 -0.8 803,193 + H281DRAFT_01884 0.40 -2.0 803,194 - H281DRAFT_01884 0.40 +1.2 803,194 - H281DRAFT_01884 0.40 -0.7 803,198 + H281DRAFT_01884 0.40 +0.8 803,265 - H281DRAFT_01884 0.42 -0.2 803,279 - H281DRAFT_01884 0.43 -2.3 803,482 + H281DRAFT_01884 0.49 -0.5 803,483 - H281DRAFT_01884 0.49 +0.2 803,483 - H281DRAFT_01884 0.49 -1.8 803,540 + H281DRAFT_01884 0.51 -5.1 803,541 - H281DRAFT_01884 0.51 -0.3 803,541 - H281DRAFT_01884 0.51 -2.5 803,565 - H281DRAFT_01884 0.52 +0.3 803,776 + H281DRAFT_01884 0.58 -0.0 803,776 + H281DRAFT_01884 0.58 +0.7 803,776 + H281DRAFT_01884 0.58 -3.7 803,776 + H281DRAFT_01884 0.58 -1.4 803,776 + H281DRAFT_01884 0.58 -0.4 803,777 - H281DRAFT_01884 0.58 +0.1 803,780 + H281DRAFT_01884 0.58 -1.2 803,780 + H281DRAFT_01884 0.58 -0.6 803,781 - H281DRAFT_01884 0.58 +0.0 803,781 - H281DRAFT_01884 0.58 -2.3 803,927 + H281DRAFT_01884 0.63 +1.1 804,067 + H281DRAFT_01884 0.67 -0.9 804,136 + H281DRAFT_01884 0.70 -1.4 804,136 + H281DRAFT_01884 0.70 -0.4 804,738 + H281DRAFT_01884 0.89 -0.4 804,738 + H281DRAFT_01884 0.89 -2.4 804,739 - H281DRAFT_01884 0.89 +0.0 804,739 - H281DRAFT_01884 0.89 -1.7 804,871 - -1.5 805,023 + +0.7 805,024 - +0.1 805,024 - -0.2 805,139 - +0.6 805,256 - H281DRAFT_01885 0.14 +0.4 805,278 - H281DRAFT_01885 0.16 -0.6 805,521 - H281DRAFT_01885 0.43 -0.4 805,623 + H281DRAFT_01885 0.55 -0.8 805,863 - H281DRAFT_01885 0.81 +0.8 805,914 - H281DRAFT_01885 0.87 -1.4 806,066 - -0.4
Or see this region's nucleotide sequence