Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01672 and H281DRAFT_01673 are separated by 355 nucleotides H281DRAFT_01673 and H281DRAFT_01674 are separated by 17 nucleotides
H281DRAFT_01672: H281DRAFT_01672 - transcriptional regulator, AsnC family, at 555,217 to 555,783
_01672
H281DRAFT_01673: H281DRAFT_01673 - hypothetical protein, at 556,139 to 556,543
_01673
H281DRAFT_01674: H281DRAFT_01674 - hypothetical protein, at 556,561 to 556,983
_01674
Position (kb) 556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 555.248 kb on + strand at 555.248 kb on + strand at 555.249 kb on - strand at 555.249 kb on - strand at 555.249 kb on - strand at 555.253 kb on - strand at 555.253 kb on - strand at 555.333 kb on + strand, within H281DRAFT_01672 at 555.578 kb on + strand, within H281DRAFT_01672 at 555.578 kb on + strand, within H281DRAFT_01672 at 555.578 kb on + strand, within H281DRAFT_01672 at 555.579 kb on - strand, within H281DRAFT_01672 at 555.579 kb on - strand, within H281DRAFT_01672 at 555.602 kb on + strand, within H281DRAFT_01672 at 555.729 kb on + strand at 555.784 kb on - strand at 556.051 kb on - strand at 556.396 kb on - strand, within H281DRAFT_01673 at 556.700 kb on + strand, within H281DRAFT_01674 at 556.760 kb on + strand, within H281DRAFT_01674 at 556.793 kb on + strand, within H281DRAFT_01674 at 556.794 kb on - strand, within H281DRAFT_01674 at 556.794 kb on - strand, within H281DRAFT_01674 at 556.926 kb on + strand, within H281DRAFT_01674 at 556.926 kb on + strand, within H281DRAFT_01674 at 556.927 kb on - strand, within H281DRAFT_01674 at 556.927 kb on - strand, within H281DRAFT_01674 at 557.003 kb on - strand at 557.010 kb on + strand at 557.011 kb on - strand at 557.011 kb on - strand at 557.018 kb on - strand at 557.266 kb on - strand at 557.306 kb on + strand at 557.342 kb on + strand at 557.406 kb on + strand at 557.406 kb on + strand at 557.406 kb on + strand at 557.450 kb on - strand at 557.539 kb on + strand at 557.542 kb on + strand at 557.542 kb on + strand at 557.542 kb on + strand at 557.542 kb on + strand at 557.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 555,248 + -0.8 555,248 + +0.4 555,249 - +0.1 555,249 - -0.6 555,249 - +0.2 555,253 - -0.1 555,253 - -0.4 555,333 + H281DRAFT_01672 0.20 -0.6 555,578 + H281DRAFT_01672 0.64 -2.8 555,578 + H281DRAFT_01672 0.64 -0.2 555,578 + H281DRAFT_01672 0.64 -2.6 555,579 - H281DRAFT_01672 0.64 -0.4 555,579 - H281DRAFT_01672 0.64 +0.7 555,602 + H281DRAFT_01672 0.68 -0.1 555,729 + +0.7 555,784 - -2.5 556,051 - -0.6 556,396 - H281DRAFT_01673 0.63 -1.9 556,700 + H281DRAFT_01674 0.33 -1.9 556,760 + H281DRAFT_01674 0.47 +0.8 556,793 + H281DRAFT_01674 0.55 -0.7 556,794 - H281DRAFT_01674 0.55 -2.3 556,794 - H281DRAFT_01674 0.55 -0.4 556,926 + H281DRAFT_01674 0.86 -2.9 556,926 + H281DRAFT_01674 0.86 -2.3 556,927 - H281DRAFT_01674 0.87 -0.2 556,927 - H281DRAFT_01674 0.87 +0.5 557,003 - -0.1 557,010 + -0.1 557,011 - -0.2 557,011 - -0.5 557,018 - +0.5 557,266 - +1.5 557,306 + +0.1 557,342 + +0.2 557,406 + -2.0 557,406 + -0.3 557,406 + -2.8 557,450 - -0.3 557,539 + -0.5 557,542 + -2.5 557,542 + -1.4 557,542 + -2.6 557,542 + -1.3 557,543 - +1.7
Or see this region's nucleotide sequence