Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01631

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01630 and H281DRAFT_01631 are separated by 20 nucleotidesH281DRAFT_01631 and H281DRAFT_01632 are separated by 530 nucleotides H281DRAFT_01630: H281DRAFT_01630 - gluconolactonase, at 509,657 to 510,601 _01630 H281DRAFT_01631: H281DRAFT_01631 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 510,622 to 511,563 _01631 H281DRAFT_01632: H281DRAFT_01632 - LuxR family transcriptional regulator, quorum-sensing transcription factor LasR, at 512,094 to 512,822 _01632 Position (kb) 510 511 512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 509.625 kb on + strandat 509.688 kb on + strandat 509.689 kb on - strandat 509.782 kb on + strand, within H281DRAFT_01630at 509.782 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 510.012 kb on + strand, within H281DRAFT_01630at 510.012 kb on + strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.151 kb on - strand, within H281DRAFT_01630at 510.151 kb on - strand, within H281DRAFT_01630at 510.346 kb on + strand, within H281DRAFT_01630at 510.836 kb on + strand, within H281DRAFT_01631at 510.837 kb on - strand, within H281DRAFT_01631at 511.067 kb on + strand, within H281DRAFT_01631at 511.127 kb on + strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.145 kb on + strand, within H281DRAFT_01631at 511.146 kb on - strand, within H281DRAFT_01631at 511.215 kb on + strand, within H281DRAFT_01631at 511.444 kb on - strand, within H281DRAFT_01631at 511.564 kb on - strandat 511.586 kb on + strandat 511.704 kb on - strandat 511.766 kb on - strandat 511.828 kb on - strandat 511.893 kb on + strandat 511.905 kb on + strandat 511.905 kb on + strandat 511.906 kb on - strandat 511.906 kb on - strandat 511.958 kb on - strandat 511.958 kb on - strandat 511.969 kb on - strandat 512.011 kb on - strandat 512.025 kb on - strandat 512.102 kb on - strandat 512.109 kb on - strandat 512.128 kb on + strandat 512.128 kb on + strandat 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.265 kb on + strandat 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.289 kb on + strand, within H281DRAFT_01632at 512.290 kb on - strand, within H281DRAFT_01632at 512.312 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.315 kb on - strand, within H281DRAFT_01632at 512.315 kb on - strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.404 kb on - strand, within H281DRAFT_01632at 512.540 kb on - strand, within H281DRAFT_01632at 512.540 kb on - strand, within H281DRAFT_01632at 512.557 kb on + strand, within H281DRAFT_01632at 512.557 kb on + strand, within H281DRAFT_01632

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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509,625 + -1.8
509,688 + +0.3
509,689 - -2.3
509,782 + H281DRAFT_01630 0.13 -2.8
509,782 + H281DRAFT_01630 0.13 -0.4
509,809 + H281DRAFT_01630 0.16 +0.3
509,809 + H281DRAFT_01630 0.16 +0.3
509,809 + H281DRAFT_01630 0.16 +0.0
509,809 + H281DRAFT_01630 0.16 -0.7
509,810 - H281DRAFT_01630 0.16 -3.5
509,810 - H281DRAFT_01630 0.16 +0.5
509,810 - H281DRAFT_01630 0.16 -0.5
509,810 - H281DRAFT_01630 0.16 +0.3
510,012 + H281DRAFT_01630 0.38 -0.1
510,012 + H281DRAFT_01630 0.38 +0.3
510,013 - H281DRAFT_01630 0.38 +1.7
510,013 - H281DRAFT_01630 0.38 -0.6
510,013 - H281DRAFT_01630 0.38 -0.4
510,013 - H281DRAFT_01630 0.38 +0.1
510,151 - H281DRAFT_01630 0.52 -0.9
510,151 - H281DRAFT_01630 0.52 -0.2
510,346 + H281DRAFT_01630 0.73 -0.7
510,836 + H281DRAFT_01631 0.23 -0.5
510,837 - H281DRAFT_01631 0.23 +0.4
511,067 + H281DRAFT_01631 0.47 +0.9
511,127 + H281DRAFT_01631 0.54 +0.9
511,128 - H281DRAFT_01631 0.54 -1.7
511,128 - H281DRAFT_01631 0.54 +0.6
511,128 - H281DRAFT_01631 0.54 +0.7
511,145 + H281DRAFT_01631 0.56 +0.4
511,146 - H281DRAFT_01631 0.56 -1.2
511,215 + H281DRAFT_01631 0.63 +0.3
511,444 - H281DRAFT_01631 0.87 +0.7
511,564 - -2.3
511,586 + -1.7
511,704 - -0.7
511,766 - -0.5
511,828 - -1.9
511,893 + +0.4
511,905 + -1.2
511,905 + +1.0
511,906 - -1.0
511,906 - +0.2
511,958 - -0.4
511,958 - -1.7
511,969 - -0.4
512,011 - -1.5
512,025 - -1.6
512,102 - -3.5
512,109 - -2.2
512,128 + -2.1
512,128 + -4.1
512,251 - H281DRAFT_01632 0.22 -4.4
512,251 - H281DRAFT_01632 0.22 -2.0
512,251 - H281DRAFT_01632 0.22 -2.5
512,251 - H281DRAFT_01632 0.22 -1.0
512,251 - H281DRAFT_01632 0.22 -3.3
512,251 - H281DRAFT_01632 0.22 -2.7
512,265 + -0.8
512,266 - H281DRAFT_01632 0.24 -4.2
512,266 - H281DRAFT_01632 0.24 -2.4
512,266 - H281DRAFT_01632 0.24 -2.8
512,266 - H281DRAFT_01632 0.24 -2.1
512,289 + H281DRAFT_01632 0.27 -3.0
512,290 - H281DRAFT_01632 0.27 -2.8
512,312 + H281DRAFT_01632 0.30 -3.0
512,314 + H281DRAFT_01632 0.30 -3.2
512,314 + H281DRAFT_01632 0.30 -2.7
512,314 + H281DRAFT_01632 0.30 -4.7
512,315 - H281DRAFT_01632 0.30 -4.1
512,315 - H281DRAFT_01632 0.30 -0.7
512,403 + H281DRAFT_01632 0.42 -1.8
512,403 + H281DRAFT_01632 0.42 -4.2
512,403 + H281DRAFT_01632 0.42 -4.6
512,403 + H281DRAFT_01632 0.42 -1.2
512,404 - H281DRAFT_01632 0.43 -2.9
512,540 - H281DRAFT_01632 0.61 -2.2
512,540 - H281DRAFT_01632 0.61 -1.8
512,557 + H281DRAFT_01632 0.64 -4.3
512,557 + H281DRAFT_01632 0.64 -2.3

Or see this region's nucleotide sequence