Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01277 and H281DRAFT_01278 are separated by 120 nucleotides H281DRAFT_01278 and H281DRAFT_01279 are separated by 45 nucleotides
H281DRAFT_01277: H281DRAFT_01277 - vanillin dehydrogenase, at 113,314 to 114,765
_01277
H281DRAFT_01278: H281DRAFT_01278 - trans-feruloyl-CoA synthase, at 114,886 to 116,775
_01278
H281DRAFT_01279: H281DRAFT_01279 - Nicotinamidase-related amidase, at 116,821 to 117,510
_01279
Position (kb) 114
115
116
117 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 114.602 kb on + strand, within H281DRAFT_01277 at 114.603 kb on - strand, within H281DRAFT_01277 at 114.603 kb on - strand, within H281DRAFT_01277 at 114.764 kb on - strand at 114.883 kb on + strand at 114.884 kb on - strand at 115.279 kb on + strand, within H281DRAFT_01278 at 115.339 kb on - strand, within H281DRAFT_01278 at 115.614 kb on - strand, within H281DRAFT_01278 at 115.756 kb on + strand, within H281DRAFT_01278 at 115.757 kb on - strand, within H281DRAFT_01278 at 115.757 kb on - strand, within H281DRAFT_01278 at 116.236 kb on + strand, within H281DRAFT_01278 at 116.377 kb on - strand, within H281DRAFT_01278 at 116.395 kb on + strand, within H281DRAFT_01278 at 116.823 kb on - strand at 116.898 kb on - strand, within H281DRAFT_01279 at 117.107 kb on + strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.307 kb on - strand, within H281DRAFT_01279 at 117.518 kb on + strand at 117.519 kb on - strand at 117.525 kb on + strand at 117.526 kb on - strand at 117.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 114,602 + H281DRAFT_01277 0.89 +0.2 114,603 - H281DRAFT_01277 0.89 +0.1 114,603 - H281DRAFT_01277 0.89 -0.3 114,764 - -0.1 114,883 + +0.7 114,884 - +0.2 115,279 + H281DRAFT_01278 0.21 -0.3 115,339 - H281DRAFT_01278 0.24 +0.1 115,614 - H281DRAFT_01278 0.39 -1.4 115,756 + H281DRAFT_01278 0.46 -1.3 115,757 - H281DRAFT_01278 0.46 +0.2 115,757 - H281DRAFT_01278 0.46 +0.3 116,236 + H281DRAFT_01278 0.71 +1.7 116,377 - H281DRAFT_01278 0.79 +0.3 116,395 + H281DRAFT_01278 0.80 +0.5 116,823 - -0.2 116,898 - H281DRAFT_01279 0.11 +5.9 117,107 + H281DRAFT_01279 0.41 -0.2 117,307 - H281DRAFT_01279 0.70 -0.6 117,307 - H281DRAFT_01279 0.70 +0.8 117,307 - H281DRAFT_01279 0.70 -2.3 117,518 + -3.3 117,519 - -0.3 117,525 + -0.3 117,526 - +0.6 117,526 - +0.1
Or see this region's nucleotide sequence