Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01211 and H281DRAFT_01212 are separated by 244 nucleotides H281DRAFT_01212 and H281DRAFT_01213 are separated by 49 nucleotides H281DRAFT_01213 and H281DRAFT_01214 are separated by 29 nucleotides H281DRAFT_01214 and H281DRAFT_01215 are separated by 197 nucleotides H281DRAFT_01215 and H281DRAFT_01216 are separated by 526 nucleotides
H281DRAFT_01211: H281DRAFT_01211 - Transcriptional regulator of acetoin/glycerol metabolism, at 50,561 to 52,537
_01211
H281DRAFT_01212: H281DRAFT_01212 - Ferredoxin, at 52,782 to 53,093
_01212
H281DRAFT_01213: H281DRAFT_01213 - Protein of unknown function (DUF1653), at 53,143 to 53,346
_01213
H281DRAFT_01214: H281DRAFT_01214 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 53,376 to 54,020
_01214
H281DRAFT_01215: H281DRAFT_01215 - hypothetical protein, at 54,218 to 54,436
_01215
H281DRAFT_01216: H281DRAFT_01216 - hypothetical protein, at 54,963 to 55,250
_01216
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.535 kb on + strand at 52.536 kb on - strand at 52.536 kb on - strand at 52.558 kb on + strand at 52.558 kb on + strand at 52.563 kb on + strand at 52.660 kb on + strand at 52.661 kb on - strand at 52.718 kb on - strand at 52.916 kb on + strand, within H281DRAFT_01212 at 52.916 kb on + strand, within H281DRAFT_01212 at 52.916 kb on + strand, within H281DRAFT_01212 at 52.917 kb on - strand, within H281DRAFT_01212 at 52.917 kb on - strand, within H281DRAFT_01212 at 52.964 kb on + strand, within H281DRAFT_01212 at 52.964 kb on + strand, within H281DRAFT_01212 at 52.965 kb on - strand, within H281DRAFT_01212 at 53.010 kb on + strand, within H281DRAFT_01212 at 53.010 kb on + strand, within H281DRAFT_01212 at 53.011 kb on - strand, within H281DRAFT_01212 at 53.011 kb on - strand at 53.092 kb on - strand at 53.304 kb on - strand, within H281DRAFT_01213 at 53.307 kb on + strand, within H281DRAFT_01213 at 53.308 kb on - strand, within H281DRAFT_01213 at 53.318 kb on + strand, within H281DRAFT_01213 at 53.319 kb on - strand, within H281DRAFT_01213 at 53.319 kb on - strand, within H281DRAFT_01213 at 53.409 kb on - strand at 53.410 kb on + strand at 53.513 kb on + strand, within H281DRAFT_01214 at 53.513 kb on + strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214 at 53.572 kb on + strand, within H281DRAFT_01214 at 53.690 kb on + strand, within H281DRAFT_01214 at 53.821 kb on + strand, within H281DRAFT_01214 at 53.821 kb on + strand, within H281DRAFT_01214 at 53.853 kb on + strand, within H281DRAFT_01214 at 53.854 kb on - strand, within H281DRAFT_01214 at 54.118 kb on - strand at 54.189 kb on - strand at 54.200 kb on + strand at 54.200 kb on + strand at 54.200 kb on + strand at 54.317 kb on - strand, within H281DRAFT_01215 at 54.335 kb on - strand, within H281DRAFT_01215 at 54.567 kb on - strand at 54.570 kb on + strand at 54.570 kb on + strand at 54.570 kb on + strand at 54.589 kb on - strand at 54.595 kb on - strand at 54.946 kb on + strand at 54.946 kb on + strand at 54.947 kb on - strand at 54.947 kb on - strand at 54.956 kb on + strand at 54.956 kb on + strand at 54.957 kb on - strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.968 kb on + strand at 54.968 kb on + strand at 54.968 kb on + strand at 54.969 kb on - strand at 54.991 kb on - strand at 54.991 kb on - strand at 54.991 kb on - strand at 55.000 kb on - strand, within H281DRAFT_01216
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 52,535 + +0.2 52,536 - +0.7 52,536 - +0.6 52,558 + -3.5 52,558 + +1.1 52,563 + +0.2 52,660 + -0.9 52,661 - -1.2 52,718 - +0.4 52,916 + H281DRAFT_01212 0.43 -0.0 52,916 + H281DRAFT_01212 0.43 -0.2 52,916 + H281DRAFT_01212 0.43 -1.0 52,917 - H281DRAFT_01212 0.43 +0.9 52,917 - H281DRAFT_01212 0.43 -1.1 52,964 + H281DRAFT_01212 0.58 -0.2 52,964 + H281DRAFT_01212 0.58 -0.0 52,965 - H281DRAFT_01212 0.59 -0.7 53,010 + H281DRAFT_01212 0.73 -0.4 53,010 + H281DRAFT_01212 0.73 +0.3 53,011 - H281DRAFT_01212 0.73 -0.9 53,011 - +0.3 53,092 - +0.0 53,304 - H281DRAFT_01213 0.79 -1.1 53,307 + H281DRAFT_01213 0.80 +0.8 53,308 - H281DRAFT_01213 0.81 +0.0 53,318 + H281DRAFT_01213 0.86 +0.0 53,319 - H281DRAFT_01213 0.86 -0.3 53,319 - H281DRAFT_01213 0.86 -1.0 53,409 - -2.4 53,410 + +0.6 53,513 + H281DRAFT_01214 0.21 -0.1 53,513 + H281DRAFT_01214 0.21 +1.2 53,514 - H281DRAFT_01214 0.21 +0.6 53,514 - H281DRAFT_01214 0.21 +1.1 53,514 - H281DRAFT_01214 0.21 +0.5 53,572 + H281DRAFT_01214 0.30 -3.4 53,690 + H281DRAFT_01214 0.49 +1.0 53,821 + H281DRAFT_01214 0.69 -0.5 53,821 + H281DRAFT_01214 0.69 +1.6 53,853 + H281DRAFT_01214 0.74 +1.4 53,854 - H281DRAFT_01214 0.74 +0.6 54,118 - -1.2 54,189 - -0.2 54,200 + +0.5 54,200 + +0.1 54,200 + +0.0 54,317 - H281DRAFT_01215 0.45 +0.3 54,335 - H281DRAFT_01215 0.53 -1.1 54,567 - -1.0 54,570 + +0.5 54,570 + +0.6 54,570 + +0.8 54,589 - -2.0 54,595 - -0.6 54,946 + -2.8 54,946 + +0.3 54,947 - -1.4 54,947 - -3.7 54,956 + -0.2 54,956 + -1.1 54,957 - -3.2 54,960 + +2.3 54,960 + +0.2 54,960 + -1.9 54,960 + -0.0 54,960 + -0.6 54,961 - +0.1 54,961 - -0.3 54,961 - -0.7 54,961 - +0.1 54,962 + -1.7 54,962 + -2.6 54,962 + -0.8 54,962 + +0.1 54,963 - +0.1 54,963 - -1.2 54,963 - -0.8 54,963 - -3.7 54,963 - -2.3 54,963 - -1.7 54,968 + -3.1 54,968 + -1.9 54,968 + -0.7 54,969 - -1.4 54,991 - -1.0 54,991 - -2.2 54,991 - -0.8 55,000 - H281DRAFT_01216 0.13 -1.7
Or see this region's nucleotide sequence