Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01111

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01109 and H281DRAFT_01110 are separated by 34 nucleotidesH281DRAFT_01110 and H281DRAFT_01111 are separated by 285 nucleotidesH281DRAFT_01111 and H281DRAFT_01112 are separated by 109 nucleotides H281DRAFT_01109: H281DRAFT_01109 - hypothetical protein, at 1,249,579 to 1,249,845 _01109 H281DRAFT_01110: H281DRAFT_01110 - Protein of unknown function (DUF2934), at 1,249,880 to 1,250,179 _01110 H281DRAFT_01111: H281DRAFT_01111 - transcriptional regulator, DeoR family, at 1,250,465 to 1,251,190 _01111 H281DRAFT_01112: H281DRAFT_01112 - deoxynucleoside transporter, permease component 2 (from data), at 1,251,300 to 1,252,394 _01112 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -2 -1 0 1 2at 1249.598 kb on + strandat 1249.833 kb on - strandat 1249.864 kb on + strandat 1250.150 kb on + strandat 1250.151 kb on - strandat 1250.151 kb on - strandat 1250.184 kb on - strandat 1250.427 kb on + strandat 1250.829 kb on - strand, within H281DRAFT_01111at 1250.898 kb on - strand, within H281DRAFT_01111at 1251.200 kb on + strandat 1251.211 kb on - strandat 1251.263 kb on + strandat 1251.344 kb on + strandat 1251.433 kb on - strand, within H281DRAFT_01112at 1251.674 kb on - strand, within H281DRAFT_01112at 1251.788 kb on - strand, within H281DRAFT_01112at 1252.045 kb on + strand, within H281DRAFT_01112

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,249,598 + -2.3
1,249,833 - +0.6
1,249,864 + +1.7
1,250,150 + -2.0
1,250,151 - -1.3
1,250,151 - +0.8
1,250,184 - -0.0
1,250,427 + +0.2
1,250,829 - H281DRAFT_01111 0.50 +1.6
1,250,898 - H281DRAFT_01111 0.60 +2.3
1,251,200 + -0.9
1,251,211 - -0.5
1,251,263 + +2.5
1,251,344 + +0.2
1,251,433 - H281DRAFT_01112 0.12 +0.1
1,251,674 - H281DRAFT_01112 0.34 -0.2
1,251,788 - H281DRAFT_01112 0.45 -0.3
1,252,045 + H281DRAFT_01112 0.68 +1.8

Or see this region's nucleotide sequence