Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01091

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01090 and H281DRAFT_01091 are separated by 201 nucleotidesH281DRAFT_01091 and H281DRAFT_01092 are separated by 111 nucleotides H281DRAFT_01090: H281DRAFT_01090 - Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family, at 1,223,133 to 1,223,924 _01090 H281DRAFT_01091: H281DRAFT_01091 - Glyoxylase, beta-lactamase superfamily II, at 1,224,126 to 1,225,037 _01091 H281DRAFT_01092: H281DRAFT_01092 - transcriptional regulator, LysR family, at 1,225,149 to 1,226,090 _01092 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -1 0 1 2at 1223.200 kb on + strandat 1223.201 kb on - strandat 1223.312 kb on + strand, within H281DRAFT_01090at 1223.377 kb on - strand, within H281DRAFT_01090at 1223.597 kb on - strand, within H281DRAFT_01090at 1223.597 kb on - strand, within H281DRAFT_01090at 1223.760 kb on + strand, within H281DRAFT_01090at 1223.961 kb on + strandat 1224.474 kb on + strand, within H281DRAFT_01091at 1224.488 kb on + strand, within H281DRAFT_01091at 1224.488 kb on + strand, within H281DRAFT_01091at 1224.760 kb on - strand, within H281DRAFT_01091at 1224.816 kb on + strand, within H281DRAFT_01091at 1224.816 kb on + strand, within H281DRAFT_01091at 1225.232 kb on + strandat 1225.255 kb on - strand, within H281DRAFT_01092at 1225.538 kb on - strand, within H281DRAFT_01092at 1225.956 kb on + strand, within H281DRAFT_01092

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,223,200 + +0.8
1,223,201 - +0.6
1,223,312 + H281DRAFT_01090 0.23 +2.0
1,223,377 - H281DRAFT_01090 0.31 -0.0
1,223,597 - H281DRAFT_01090 0.59 -1.2
1,223,597 - H281DRAFT_01090 0.59 -0.4
1,223,760 + H281DRAFT_01090 0.79 +0.9
1,223,961 + +0.3
1,224,474 + H281DRAFT_01091 0.38 -0.3
1,224,488 + H281DRAFT_01091 0.40 -1.7
1,224,488 + H281DRAFT_01091 0.40 +0.1
1,224,760 - H281DRAFT_01091 0.70 -0.6
1,224,816 + H281DRAFT_01091 0.76 -0.6
1,224,816 + H281DRAFT_01091 0.76 +0.6
1,225,232 + +0.2
1,225,255 - H281DRAFT_01092 0.11 +0.9
1,225,538 - H281DRAFT_01092 0.41 -0.6
1,225,956 + H281DRAFT_01092 0.86 +1.1

Or see this region's nucleotide sequence