Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00968

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00967 and H281DRAFT_00968 are separated by 202 nucleotidesH281DRAFT_00968 and H281DRAFT_00969 are separated by 208 nucleotidesH281DRAFT_00969 and H281DRAFT_00970 are separated by 129 nucleotides H281DRAFT_00967: H281DRAFT_00967 - assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4), at 1,081,887 to 1,084,427 _00967 H281DRAFT_00968: H281DRAFT_00968 - MFS transporter, NNP family, nitrate/nitrite transporter, at 1,084,630 to 1,085,997 _00968 H281DRAFT_00969: H281DRAFT_00969 - Type IV pili methyl-accepting chemotaxis transducer N-term, at 1,086,206 to 1,086,799 _00969 H281DRAFT_00970: H281DRAFT_00970 - putative Mg2+ transporter-C (MgtC) family protein, at 1,086,929 to 1,087,417 _00970 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -1 0 1 2at 1083.651 kb on + strand, within H281DRAFT_00967at 1083.762 kb on + strandat 1083.865 kb on - strand, within H281DRAFT_00967at 1084.089 kb on + strand, within H281DRAFT_00967at 1084.158 kb on + strand, within H281DRAFT_00967at 1084.450 kb on + strandat 1085.433 kb on + strand, within H281DRAFT_00968at 1086.115 kb on + strandat 1086.499 kb on - strand, within H281DRAFT_00969at 1086.541 kb on - strand, within H281DRAFT_00969at 1086.814 kb on + strandat 1086.927 kb on - strandat 1086.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,083,651 + H281DRAFT_00967 0.69 +1.1
1,083,762 + -1.1
1,083,865 - H281DRAFT_00967 0.78 +0.7
1,084,089 + H281DRAFT_00967 0.87 +0.7
1,084,158 + H281DRAFT_00967 0.89 +2.2
1,084,450 + -0.1
1,085,433 + H281DRAFT_00968 0.59 -0.1
1,086,115 + -0.1
1,086,499 - H281DRAFT_00969 0.49 -0.8
1,086,541 - H281DRAFT_00969 0.56 -0.8
1,086,814 + -1.0
1,086,927 - +0.9
1,086,927 - +0.0

Or see this region's nucleotide sequence