Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00913

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00911 and H281DRAFT_00912 are separated by 1 nucleotidesH281DRAFT_00912 and H281DRAFT_00913 are separated by 388 nucleotidesH281DRAFT_00913 and H281DRAFT_00914 are separated by 49 nucleotides H281DRAFT_00911: H281DRAFT_00911 - transcriptional regulator, BolA protein family, at 1,013,442 to 1,013,753 _00911 H281DRAFT_00912: H281DRAFT_00912 - intracellular septation protein, at 1,013,755 to 1,014,285 _00912 H281DRAFT_00913: H281DRAFT_00913 - peptide-methionine (R)-S-oxide reductase, at 1,014,674 to 1,015,096 _00913 H281DRAFT_00914: H281DRAFT_00914 - Uncharacterized conserved protein YdiU, UPF0061 family, at 1,015,146 to 1,016,702 _00914 Position (kb) 1014 1015 1016Strain fitness (log2 ratio) -2 -1 0 1at 1013.691 kb on - strand, within H281DRAFT_00911at 1013.744 kb on + strandat 1013.771 kb on + strandat 1014.692 kb on + strandat 1014.692 kb on + strandat 1014.692 kb on + strandat 1014.859 kb on - strand, within H281DRAFT_00913at 1014.859 kb on - strand, within H281DRAFT_00913at 1014.859 kb on - strand, within H281DRAFT_00913at 1014.859 kb on - strand, within H281DRAFT_00913at 1014.933 kb on + strand, within H281DRAFT_00913at 1014.934 kb on - strand, within H281DRAFT_00913at 1014.961 kb on - strand, within H281DRAFT_00913at 1015.097 kb on - strandat 1015.119 kb on + strandat 1015.119 kb on + strandat 1015.202 kb on - strandat 1015.202 kb on - strandat 1015.402 kb on + strand, within H281DRAFT_00914at 1015.488 kb on - strand, within H281DRAFT_00914at 1015.705 kb on + strand, within H281DRAFT_00914at 1015.783 kb on + strand, within H281DRAFT_00914at 1015.790 kb on - strand, within H281DRAFT_00914at 1015.823 kb on - strand, within H281DRAFT_00914

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,013,691 - H281DRAFT_00911 0.80 -0.2
1,013,744 + +0.6
1,013,771 + +0.7
1,014,692 + +0.1
1,014,692 + +1.2
1,014,692 + +0.2
1,014,859 - H281DRAFT_00913 0.44 +0.1
1,014,859 - H281DRAFT_00913 0.44 -0.9
1,014,859 - H281DRAFT_00913 0.44 +0.4
1,014,859 - H281DRAFT_00913 0.44 -0.6
1,014,933 + H281DRAFT_00913 0.61 -0.0
1,014,934 - H281DRAFT_00913 0.61 +0.5
1,014,961 - H281DRAFT_00913 0.68 +0.6
1,015,097 - -0.8
1,015,119 + +0.0
1,015,119 + +0.2
1,015,202 - +0.4
1,015,202 - +0.6
1,015,402 + H281DRAFT_00914 0.16 +0.1
1,015,488 - H281DRAFT_00914 0.22 -1.8
1,015,705 + H281DRAFT_00914 0.36 +1.3
1,015,783 + H281DRAFT_00914 0.41 +0.6
1,015,790 - H281DRAFT_00914 0.41 -0.7
1,015,823 - H281DRAFT_00914 0.43 -1.6

Or see this region's nucleotide sequence