Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00321 and H281DRAFT_00322 are separated by 118 nucleotides H281DRAFT_00322 and H281DRAFT_00323 are separated by 87 nucleotides H281DRAFT_00323 and H281DRAFT_00324 are separated by 47 nucleotides
H281DRAFT_00321: H281DRAFT_00321 - Cell wall-associated hydrolase, NlpC family, at 349,891 to 351,606
_00321
H281DRAFT_00322: H281DRAFT_00322 - molybdenum-pterin binding domain-containing protein, at 351,725 to 352,150
_00322
H281DRAFT_00323: H281DRAFT_00323 - GAF domain-containing protein, at 352,238 to 352,738
_00323
H281DRAFT_00324: H281DRAFT_00324 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 352,786 to 354,480
_00324
Position (kb) 351
352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 350.818 kb on - strand, within H281DRAFT_00321 at 350.927 kb on + strand, within H281DRAFT_00321 at 350.928 kb on - strand, within H281DRAFT_00321 at 351.432 kb on - strand, within H281DRAFT_00321 at 351.598 kb on + strand at 351.713 kb on + strand at 351.725 kb on - strand at 351.842 kb on - strand, within H281DRAFT_00322 at 352.148 kb on + strand at 352.148 kb on + strand at 352.148 kb on + strand at 352.187 kb on + strand at 352.188 kb on - strand at 352.283 kb on + strand at 352.368 kb on + strand, within H281DRAFT_00323 at 352.528 kb on - strand, within H281DRAFT_00323 at 352.528 kb on - strand, within H281DRAFT_00323 at 352.630 kb on - strand, within H281DRAFT_00323 at 352.947 kb on + strand at 353.138 kb on - strand, within H281DRAFT_00324
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 350,818 - H281DRAFT_00321 0.54 -0.6 350,927 + H281DRAFT_00321 0.60 +0.7 350,928 - H281DRAFT_00321 0.60 -0.7 351,432 - H281DRAFT_00321 0.90 +0.4 351,598 + -1.4 351,713 + -0.3 351,725 - -0.4 351,842 - H281DRAFT_00322 0.27 +0.0 352,148 + -0.5 352,148 + -0.1 352,148 + -0.4 352,187 + -1.3 352,188 - -2.8 352,283 + +0.3 352,368 + H281DRAFT_00323 0.26 +0.3 352,528 - H281DRAFT_00323 0.58 +0.3 352,528 - H281DRAFT_00323 0.58 -0.5 352,630 - H281DRAFT_00323 0.78 +1.6 352,947 + +0.8 353,138 - H281DRAFT_00324 0.21 +1.0
Or see this region's nucleotide sequence