Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00279 and H281DRAFT_00280 overlap by 7 nucleotides H281DRAFT_00280 and H281DRAFT_00281 overlap by 4 nucleotides H281DRAFT_00281 and H281DRAFT_00282 are separated by 443 nucleotides H281DRAFT_00282 and H281DRAFT_00283 overlap by 1 nucleotides
H281DRAFT_00279: H281DRAFT_00279 - chorismate lyase, at 300,185 to 300,901
_00279
H281DRAFT_00280: H281DRAFT_00280 - G/U mismatch-specific uracil-DNA glycosylase, at 300,895 to 301,368
_00280
H281DRAFT_00281: H281DRAFT_00281 - Spermidine synthase, at 301,365 to 302,276
_00281
H281DRAFT_00282: H281DRAFT_00282 - Protein of unknown function (DUF3311), at 302,720 to 302,959
_00282
H281DRAFT_00283: H281DRAFT_00283 - solute:Na+ symporter, SSS family, at 302,959 to 304,509
_00283
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 300.487 kb on - strand, within H281DRAFT_00279 at 300.537 kb on - strand, within H281DRAFT_00279 at 300.537 kb on - strand, within H281DRAFT_00279 at 300.603 kb on - strand, within H281DRAFT_00279 at 300.742 kb on - strand, within H281DRAFT_00279 at 300.750 kb on + strand, within H281DRAFT_00279 at 300.751 kb on - strand, within H281DRAFT_00279 at 300.936 kb on + strand at 300.936 kb on + strand at 300.936 kb on + strand at 300.937 kb on - strand at 300.991 kb on + strand, within H281DRAFT_00280 at 301.289 kb on + strand, within H281DRAFT_00280 at 301.289 kb on + strand, within H281DRAFT_00280 at 301.289 kb on + strand, within H281DRAFT_00280 at 301.290 kb on - strand, within H281DRAFT_00280 at 301.317 kb on + strand, within H281DRAFT_00280 at 301.317 kb on + strand, within H281DRAFT_00280 at 301.317 kb on + strand, within H281DRAFT_00280 at 301.317 kb on + strand, within H281DRAFT_00280 at 301.318 kb on - strand, within H281DRAFT_00280 at 301.567 kb on - strand, within H281DRAFT_00281 at 301.683 kb on - strand, within H281DRAFT_00281 at 301.921 kb on - strand, within H281DRAFT_00281 at 302.364 kb on - strand at 302.574 kb on + strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.576 kb on + strand at 302.576 kb on + strand at 302.576 kb on + strand at 302.577 kb on - strand at 302.700 kb on - strand at 302.700 kb on - strand at 302.702 kb on + strand at 302.852 kb on + strand, within H281DRAFT_00282 at 302.907 kb on - strand, within H281DRAFT_00282 at 302.908 kb on + strand, within H281DRAFT_00282 at 302.909 kb on - strand, within H281DRAFT_00282 at 302.909 kb on - strand, within H281DRAFT_00282 at 302.990 kb on + strand at 303.140 kb on - strand, within H281DRAFT_00283 at 303.206 kb on - strand, within H281DRAFT_00283
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 300,487 - H281DRAFT_00279 0.42 +1.4 300,537 - H281DRAFT_00279 0.49 +1.2 300,537 - H281DRAFT_00279 0.49 +0.9 300,603 - H281DRAFT_00279 0.58 +0.1 300,742 - H281DRAFT_00279 0.78 -1.6 300,750 + H281DRAFT_00279 0.79 +0.1 300,751 - H281DRAFT_00279 0.79 -0.6 300,936 + -0.8 300,936 + +0.2 300,936 + +0.4 300,937 - +0.2 300,991 + H281DRAFT_00280 0.20 +0.4 301,289 + H281DRAFT_00280 0.83 +0.8 301,289 + H281DRAFT_00280 0.83 +0.7 301,289 + H281DRAFT_00280 0.83 +1.0 301,290 - H281DRAFT_00280 0.83 -1.9 301,317 + H281DRAFT_00280 0.89 -1.5 301,317 + H281DRAFT_00280 0.89 +0.1 301,317 + H281DRAFT_00280 0.89 +0.3 301,317 + H281DRAFT_00280 0.89 +0.7 301,318 - H281DRAFT_00280 0.89 +1.2 301,567 - H281DRAFT_00281 0.22 +1.2 301,683 - H281DRAFT_00281 0.35 -2.4 301,921 - H281DRAFT_00281 0.61 +0.3 302,364 - -0.9 302,574 + -0.3 302,575 - -1.6 302,575 - +0.5 302,575 - -0.3 302,576 + -0.1 302,576 + +0.1 302,576 + +0.3 302,577 - -1.3 302,700 - -0.0 302,700 - +0.3 302,702 + -0.1 302,852 + H281DRAFT_00282 0.55 +0.4 302,907 - H281DRAFT_00282 0.78 +0.2 302,908 + H281DRAFT_00282 0.78 -1.2 302,909 - H281DRAFT_00282 0.79 +0.3 302,909 - H281DRAFT_00282 0.79 +1.3 302,990 + +0.0 303,140 - H281DRAFT_00283 0.12 -0.0 303,206 - H281DRAFT_00283 0.16 +0.8
Or see this region's nucleotide sequence