Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00220 and H281DRAFT_00221 are separated by 617 nucleotides H281DRAFT_00221 and H281DRAFT_00222 are separated by 42 nucleotides H281DRAFT_00222 and H281DRAFT_00223 overlap by 4 nucleotides
H281DRAFT_00220: H281DRAFT_00220 - Outer membrane protein (porin), at 239,354 to 240,475
_00220
H281DRAFT_00221: H281DRAFT_00221 - amino acid ABC transporter ATP-binding protein, PAAT family, at 241,093 to 241,872
_00221
H281DRAFT_00222: H281DRAFT_00222 - amino acid ABC transporter membrane protein 2, PAAT family, at 241,915 to 242,628
_00222
H281DRAFT_00223: H281DRAFT_00223 - amino acid ABC transporter membrane protein 1, PAAT family, at 242,625 to 243,314
_00223
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.137 kb on - strand, within H281DRAFT_00220 at 240.145 kb on + strand, within H281DRAFT_00220 at 240.369 kb on - strand at 240.369 kb on - strand at 240.373 kb on - strand at 240.399 kb on + strand at 240.399 kb on + strand at 240.399 kb on + strand at 240.400 kb on - strand at 240.512 kb on + strand at 240.581 kb on + strand at 240.581 kb on + strand at 240.711 kb on - strand at 240.724 kb on + strand at 240.886 kb on + strand at 240.912 kb on - strand at 240.912 kb on - strand at 240.942 kb on - strand at 241.007 kb on + strand at 241.086 kb on - strand at 241.086 kb on - strand at 241.893 kb on - strand at 242.000 kb on + strand, within H281DRAFT_00222 at 242.001 kb on - strand, within H281DRAFT_00222 at 242.040 kb on - strand, within H281DRAFT_00222 at 242.142 kb on - strand, within H281DRAFT_00222 at 242.144 kb on + strand, within H281DRAFT_00222 at 242.145 kb on - strand, within H281DRAFT_00222 at 242.190 kb on - strand, within H281DRAFT_00222 at 242.213 kb on + strand, within H281DRAFT_00222 at 242.280 kb on + strand, within H281DRAFT_00222 at 242.325 kb on + strand, within H281DRAFT_00222 at 242.326 kb on - strand, within H281DRAFT_00222 at 242.381 kb on + strand, within H281DRAFT_00222 at 242.404 kb on + strand, within H281DRAFT_00222 at 242.404 kb on + strand, within H281DRAFT_00222 at 242.438 kb on + strand, within H281DRAFT_00222 at 242.445 kb on - strand, within H281DRAFT_00222 at 242.588 kb on + strand at 242.589 kb on - strand at 242.629 kb on - strand at 242.671 kb on + strand at 242.843 kb on + strand, within H281DRAFT_00223
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 240,136 + H281DRAFT_00220 0.70 +2.1 240,136 + H281DRAFT_00220 0.70 -0.1 240,136 + H281DRAFT_00220 0.70 +0.4 240,137 - H281DRAFT_00220 0.70 -1.4 240,145 + H281DRAFT_00220 0.70 +1.7 240,369 - +0.9 240,369 - -3.1 240,373 - -0.4 240,399 + -0.0 240,399 + -1.4 240,399 + -1.5 240,400 - -0.3 240,512 + +0.8 240,581 + -0.4 240,581 + -0.8 240,711 - +0.3 240,724 + +0.7 240,886 + +2.7 240,912 - -1.1 240,912 - +0.9 240,942 - -0.1 241,007 + +0.2 241,086 - -0.0 241,086 - +1.1 241,893 - +1.2 242,000 + H281DRAFT_00222 0.12 -1.2 242,001 - H281DRAFT_00222 0.12 +0.8 242,040 - H281DRAFT_00222 0.18 -0.4 242,142 - H281DRAFT_00222 0.32 -2.2 242,144 + H281DRAFT_00222 0.32 -0.4 242,145 - H281DRAFT_00222 0.32 -0.1 242,190 - H281DRAFT_00222 0.39 -0.9 242,213 + H281DRAFT_00222 0.42 -0.0 242,280 + H281DRAFT_00222 0.51 -0.1 242,325 + H281DRAFT_00222 0.57 +0.9 242,326 - H281DRAFT_00222 0.58 +0.0 242,381 + H281DRAFT_00222 0.65 -2.2 242,404 + H281DRAFT_00222 0.68 -0.8 242,404 + H281DRAFT_00222 0.68 -0.0 242,438 + H281DRAFT_00222 0.73 -0.6 242,445 - H281DRAFT_00222 0.74 -0.1 242,588 + -0.1 242,589 - +0.2 242,629 - +0.4 242,671 + +0.3 242,843 + H281DRAFT_00223 0.32 +0.3
Or see this region's nucleotide sequence