Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00002

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00001 and H281DRAFT_00002 are separated by 367 nucleotidesH281DRAFT_00002 and H281DRAFT_00003 are separated by 800 nucleotides H281DRAFT_00001: H281DRAFT_00001 - Transposase DDE domain-containing protein, at 1 to 705 _00001 H281DRAFT_00002: H281DRAFT_00002 - hypothetical protein, at 1,073 to 1,918 _00002 H281DRAFT_00003: H281DRAFT_00003 - nitronate monooxygenase, at 2,719 to 3,729 _00003 Position (kb) 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.829 kb on + strandat 1.033 kb on + strandat 1.033 kb on + strandat 1.034 kb on - strandat 1.034 kb on - strandat 1.069 kb on - strandat 1.080 kb on + strandat 1.122 kb on + strandat 1.122 kb on + strandat 1.123 kb on - strandat 1.123 kb on - strandat 1.123 kb on - strandat 1.123 kb on - strandat 1.599 kb on - strand, within H281DRAFT_00002at 1.681 kb on - strand, within H281DRAFT_00002at 1.728 kb on + strand, within H281DRAFT_00002at 1.728 kb on + strand, within H281DRAFT_00002at 1.728 kb on + strand, within H281DRAFT_00002at 1.729 kb on - strand, within H281DRAFT_00002at 1.729 kb on - strand, within H281DRAFT_00002at 1.729 kb on - strand, within H281DRAFT_00002at 1.820 kb on - strand, within H281DRAFT_00002at 1.932 kb on + strandat 1.999 kb on - strandat 1.999 kb on - strandat 2.031 kb on + strandat 2.077 kb on + strandat 2.078 kb on - strandat 2.168 kb on + strandat 2.169 kb on - strandat 2.169 kb on - strandat 2.305 kb on + strandat 2.305 kb on + strandat 2.306 kb on - strandat 2.306 kb on - strandat 2.602 kb on + strandat 2.602 kb on + strandat 2.603 kb on - strandat 2.603 kb on - strandat 2.603 kb on - strandat 2.631 kb on - strandat 2.631 kb on - strandat 2.754 kb on + strandat 2.810 kb on + strandat 2.822 kb on + strand, within H281DRAFT_00003at 2.822 kb on + strand, within H281DRAFT_00003at 2.822 kb on + strand, within H281DRAFT_00003at 2.828 kb on + strand, within H281DRAFT_00003at 2.828 kb on + strandat 2.829 kb on - strand, within H281DRAFT_00003at 2.862 kb on - strand, within H281DRAFT_00003

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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829 + +0.4
1,033 + +1.3
1,033 + -0.8
1,034 - +0.5
1,034 - -0.0
1,069 - +0.6
1,080 + -0.3
1,122 + -2.9
1,122 + +0.5
1,123 - -0.6
1,123 - -0.0
1,123 - +0.2
1,123 - -0.9
1,599 - H281DRAFT_00002 0.62 +0.9
1,681 - H281DRAFT_00002 0.72 +1.6
1,728 + H281DRAFT_00002 0.77 +0.2
1,728 + H281DRAFT_00002 0.77 -0.7
1,728 + H281DRAFT_00002 0.77 -0.4
1,729 - H281DRAFT_00002 0.78 +1.8
1,729 - H281DRAFT_00002 0.78 +0.8
1,729 - H281DRAFT_00002 0.78 -0.8
1,820 - H281DRAFT_00002 0.88 +0.2
1,932 + -1.4
1,999 - -3.1
1,999 - -2.2
2,031 + -2.9
2,077 + -1.2
2,078 - -3.8
2,168 + +0.4
2,169 - +0.7
2,169 - -0.2
2,305 + +0.1
2,305 + +1.5
2,306 - +0.5
2,306 - +0.9
2,602 + +0.1
2,602 + +2.1
2,603 - -1.1
2,603 - +0.6
2,603 - -0.3
2,631 - -2.5
2,631 - +1.3
2,754 + +0.6
2,810 + -1.2
2,822 + H281DRAFT_00003 0.10 +0.3
2,822 + H281DRAFT_00003 0.10 -0.4
2,822 + H281DRAFT_00003 0.10 -0.0
2,828 + H281DRAFT_00003 0.11 -1.2
2,828 + -0.5
2,829 - H281DRAFT_00003 0.11 -0.1
2,862 - H281DRAFT_00003 0.14 +0.1

Or see this region's nucleotide sequence