Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00380 and PGA1_65p00390 are separated by 103 nucleotides PGA1_65p00390 and PGA1_65p00400 are separated by 148 nucleotides PGA1_65p00400 and PGA1_65p00410 are separated by 17 nucleotides
PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744
_65p00380
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
PGA1_65p00400: PGA1_65p00400 - ABC transporter, ATP-binding protein, at 55,160 to 55,816
_65p00400
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.197 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.198 kb on - strand, within PGA1_65p00380 at 53.261 kb on + strand, within PGA1_65p00380 at 53.602 kb on + strand, within PGA1_65p00380 at 53.610 kb on - strand, within PGA1_65p00380 at 53.610 kb on - strand, within PGA1_65p00380 at 53.674 kb on + strand at 53.827 kb on - strand at 53.827 kb on - strand at 53.986 kb on + strand, within PGA1_65p00390 at 53.993 kb on + strand, within PGA1_65p00390 at 53.993 kb on + strand, within PGA1_65p00390 at 54.114 kb on - strand, within PGA1_65p00390 at 54.174 kb on - strand, within PGA1_65p00390 at 54.319 kb on + strand, within PGA1_65p00390 at 54.407 kb on + strand, within PGA1_65p00390 at 54.415 kb on - strand, within PGA1_65p00390 at 54.601 kb on + strand, within PGA1_65p00390 at 54.631 kb on - strand, within PGA1_65p00390 at 54.633 kb on + strand, within PGA1_65p00390 at 54.641 kb on - strand, within PGA1_65p00390 at 54.668 kb on - strand, within PGA1_65p00390 at 54.762 kb on - strand, within PGA1_65p00390 at 54.788 kb on + strand, within PGA1_65p00390 at 54.816 kb on + strand, within PGA1_65p00390 at 54.896 kb on - strand at 54.912 kb on + strand at 54.945 kb on - strand at 54.992 kb on + strand at 55.006 kb on + strand at 55.028 kb on - strand at 55.202 kb on - strand at 55.227 kb on + strand, within PGA1_65p00400 at 55.568 kb on + strand, within PGA1_65p00400 at 55.664 kb on - strand, within PGA1_65p00400 at 55.668 kb on + strand, within PGA1_65p00400 at 55.890 kb on - strand at 55.911 kb on - strand at 55.992 kb on - strand, within PGA1_65p00410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 53,197 - PGA1_65p00380 0.58 -0.3 53,197 - PGA1_65p00380 0.58 +0.2 53,198 - PGA1_65p00380 0.59 +0.2 53,261 + PGA1_65p00380 0.63 +0.3 53,602 + PGA1_65p00380 0.89 -0.7 53,610 - PGA1_65p00380 0.90 +0.7 53,610 - PGA1_65p00380 0.90 +1.7 53,674 + +1.0 53,827 - +0.1 53,827 - -0.3 53,986 + PGA1_65p00390 0.12 +0.4 53,993 + PGA1_65p00390 0.12 +1.4 53,993 + PGA1_65p00390 0.12 +1.0 54,114 - PGA1_65p00390 0.23 +1.0 54,174 - PGA1_65p00390 0.28 +0.7 54,319 + PGA1_65p00390 0.40 -0.3 54,407 + PGA1_65p00390 0.48 -0.3 54,415 - PGA1_65p00390 0.49 +0.0 54,601 + PGA1_65p00390 0.65 +2.0 54,631 - PGA1_65p00390 0.67 +0.7 54,633 + PGA1_65p00390 0.67 -0.4 54,641 - PGA1_65p00390 0.68 -0.3 54,668 - PGA1_65p00390 0.70 -0.3 54,762 - PGA1_65p00390 0.79 -1.1 54,788 + PGA1_65p00390 0.81 +1.5 54,816 + PGA1_65p00390 0.83 +2.0 54,896 - -0.7 54,912 + +0.3 54,945 - +0.7 54,992 + -2.7 55,006 + -1.3 55,028 - -0.9 55,202 - -0.0 55,227 + PGA1_65p00400 0.10 +0.7 55,568 + PGA1_65p00400 0.62 -0.3 55,664 - PGA1_65p00400 0.77 +0.1 55,668 + PGA1_65p00400 0.77 -0.1 55,890 - -1.4 55,911 - +0.1 55,992 - PGA1_65p00410 0.11 +0.7
Or see this region's nucleotide sequence