Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 196.602 kb on + strand, within PGA1_262p01790 at 196.757 kb on + strand, within PGA1_262p01790 at 196.842 kb on + strand, within PGA1_262p01790 at 196.895 kb on + strand, within PGA1_262p01790 at 197.149 kb on - strand, within PGA1_262p01790 at 197.189 kb on + strand, within PGA1_262p01790 at 197.377 kb on - strand, within PGA1_262p01790 at 197.474 kb on + strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.495 kb on + strand at 197.541 kb on - strand at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand at 198.604 kb on + strand at 198.612 kb on - strand at 198.639 kb on + strand at 198.652 kb on - strand at 198.762 kb on + strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.777 kb on + strand, within PGA1_262p01810 at 198.850 kb on - strand, within PGA1_262p01810 at 198.905 kb on + strand, within PGA1_262p01810 at 198.922 kb on + strand, within PGA1_262p01810 at 199.230 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.440 kb on - strand, within PGA1_262p01810 at 199.475 kb on + strand, within PGA1_262p01810 at 199.478 kb on - strand, within PGA1_262p01810 at 199.484 kb on - strand, within PGA1_262p01810 at 199.488 kb on - strand, within PGA1_262p01810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 196,602 + PGA1_262p01790 0.34 +0.5 196,757 + PGA1_262p01790 0.44 -0.1 196,842 + PGA1_262p01790 0.50 -0.5 196,895 + PGA1_262p01790 0.54 +0.8 197,149 - PGA1_262p01790 0.71 +0.1 197,189 + PGA1_262p01790 0.74 +1.7 197,377 - PGA1_262p01790 0.87 +0.4 197,474 + +0.5 197,482 - +0.9 197,482 - -0.1 197,482 - +0.1 197,495 + +1.1 197,541 - -1.0 197,576 + +0.9 197,730 - PGA1_262p01800 0.17 +1.1 197,730 - PGA1_262p01800 0.17 -0.2 197,813 + PGA1_262p01800 0.26 +1.1 198,074 + PGA1_262p01800 0.53 +2.1 198,074 + PGA1_262p01800 0.53 -0.5 198,082 - PGA1_262p01800 0.53 +2.8 198,089 - PGA1_262p01800 0.54 -0.9 198,240 + PGA1_262p01800 0.70 +1.7 198,240 + PGA1_262p01800 0.70 +1.5 198,240 + PGA1_262p01800 0.70 +0.9 198,274 + PGA1_262p01800 0.73 -0.5 198,279 + PGA1_262p01800 0.74 -0.5 198,362 - PGA1_262p01800 0.82 +0.2 198,448 + -0.5 198,456 - -0.8 198,470 + +1.0 198,479 + +0.9 198,479 + -0.2 198,525 + -0.5 198,555 - +2.0 198,604 + +0.7 198,612 - -2.7 198,639 + +0.1 198,652 - +1.1 198,762 + PGA1_262p01810 0.12 +0.5 198,770 - PGA1_262p01810 0.13 +0.4 198,770 - PGA1_262p01810 0.13 +0.7 198,777 + PGA1_262p01810 0.13 -1.4 198,850 - PGA1_262p01810 0.18 -0.1 198,905 + PGA1_262p01810 0.21 +0.3 198,922 + PGA1_262p01810 0.22 -1.0 199,230 - PGA1_262p01810 0.40 +0.4 199,280 - PGA1_262p01810 0.43 -0.5 199,280 - PGA1_262p01810 0.43 +0.8 199,280 - PGA1_262p01810 0.43 -0.5 199,440 - PGA1_262p01810 0.52 +0.5 199,475 + PGA1_262p01810 0.54 -0.1 199,478 - PGA1_262p01810 0.54 +0.7 199,484 - PGA1_262p01810 0.55 +1.1 199,488 - PGA1_262p01810 0.55 -0.5
Or see this region's nucleotide sequence