Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01720 and PGA1_262p01730 overlap by 4 nucleotides PGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotides PGA1_262p01740 and PGA1_262p01750 are separated by 11 nucleotides
PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834
_262p01720
PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808
_262p01730
PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734
_262p01740
PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389
_262p01750
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 189.825 kb on + strand at 189.835 kb on + strand at 189.893 kb on + strand at 189.899 kb on - strand at 189.899 kb on - strand at 189.940 kb on - strand, within PGA1_262p01730 at 189.976 kb on - strand, within PGA1_262p01730 at 189.981 kb on - strand, within PGA1_262p01730 at 190.051 kb on - strand, within PGA1_262p01730 at 190.107 kb on - strand, within PGA1_262p01730 at 190.243 kb on - strand, within PGA1_262p01730 at 190.311 kb on - strand, within PGA1_262p01730 at 190.340 kb on - strand, within PGA1_262p01730 at 190.389 kb on - strand, within PGA1_262p01730 at 190.471 kb on + strand, within PGA1_262p01730 at 190.471 kb on + strand, within PGA1_262p01730 at 190.506 kb on + strand, within PGA1_262p01730 at 190.574 kb on + strand, within PGA1_262p01730 at 190.611 kb on - strand, within PGA1_262p01730 at 190.613 kb on + strand, within PGA1_262p01730 at 190.620 kb on - strand, within PGA1_262p01730 at 190.729 kb on + strand at 190.737 kb on - strand at 190.781 kb on + strand at 190.809 kb on + strand at 190.849 kb on - strand at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.912 kb on - strand, within PGA1_262p01740 at 190.968 kb on - strand, within PGA1_262p01740 at 191.139 kb on + strand, within PGA1_262p01740 at 191.231 kb on - strand, within PGA1_262p01740 at 191.261 kb on - strand, within PGA1_262p01740 at 191.266 kb on - strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.327 kb on - strand, within PGA1_262p01740 at 191.375 kb on + strand, within PGA1_262p01740 at 191.410 kb on + strand, within PGA1_262p01740 at 191.418 kb on - strand, within PGA1_262p01740 at 191.457 kb on - strand, within PGA1_262p01740 at 191.520 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.609 kb on - strand, within PGA1_262p01740 at 191.671 kb on + strand at 191.744 kb on - strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.826 kb on - strand at 191.826 kb on - strand at 191.866 kb on - strand at 191.881 kb on + strand at 192.051 kb on - strand, within PGA1_262p01750 at 192.155 kb on - strand, within PGA1_262p01750 at 192.178 kb on - strand, within PGA1_262p01750 at 192.196 kb on + strand, within PGA1_262p01750 at 192.223 kb on + strand, within PGA1_262p01750 at 192.274 kb on + strand, within PGA1_262p01750 at 192.388 kb on + strand, within PGA1_262p01750 at 192.396 kb on - strand, within PGA1_262p01750 at 192.412 kb on + strand, within PGA1_262p01750 at 192.446 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.629 kb on + strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.668 kb on + strand, within PGA1_262p01750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 189,825 + -0.3 189,835 + +0.5 189,893 + +0.7 189,899 - -0.7 189,899 - +1.1 189,940 - PGA1_262p01730 0.11 -1.5 189,976 - PGA1_262p01730 0.15 -1.0 189,981 - PGA1_262p01730 0.15 -1.5 190,051 - PGA1_262p01730 0.22 +2.1 190,107 - PGA1_262p01730 0.28 +0.3 190,243 - PGA1_262p01730 0.42 +2.8 190,311 - PGA1_262p01730 0.49 -1.1 190,340 - PGA1_262p01730 0.52 -0.0 190,389 - PGA1_262p01730 0.57 +0.9 190,471 + PGA1_262p01730 0.65 +2.0 190,471 + PGA1_262p01730 0.65 +0.7 190,506 + PGA1_262p01730 0.69 +0.1 190,574 + PGA1_262p01730 0.76 -0.6 190,611 - PGA1_262p01730 0.80 +2.5 190,613 + PGA1_262p01730 0.80 -0.9 190,620 - PGA1_262p01730 0.81 -0.1 190,729 + -2.1 190,737 - +0.9 190,781 + +0.1 190,809 + -0.2 190,849 - +0.3 190,900 - PGA1_262p01740 0.10 -0.6 190,900 - PGA1_262p01740 0.10 +0.8 190,900 - PGA1_262p01740 0.10 -0.9 190,912 - PGA1_262p01740 0.12 +1.1 190,968 - PGA1_262p01740 0.18 +1.5 191,139 + PGA1_262p01740 0.36 -0.1 191,231 - PGA1_262p01740 0.46 +1.5 191,261 - PGA1_262p01740 0.49 +1.5 191,266 - PGA1_262p01740 0.50 +1.6 191,323 + PGA1_262p01740 0.56 +0.7 191,323 + PGA1_262p01740 0.56 +1.5 191,327 - PGA1_262p01740 0.56 +0.4 191,375 + PGA1_262p01740 0.61 +0.2 191,410 + PGA1_262p01740 0.65 +0.6 191,418 - PGA1_262p01740 0.66 -0.3 191,457 - PGA1_262p01740 0.70 -0.1 191,520 + PGA1_262p01740 0.77 -0.4 191,601 + PGA1_262p01740 0.86 -0.9 191,601 + PGA1_262p01740 0.86 +0.5 191,601 + PGA1_262p01740 0.86 -0.3 191,609 - PGA1_262p01740 0.86 +0.0 191,671 + +0.2 191,744 - -1.1 191,818 + +0.5 191,818 + +1.5 191,818 + -0.8 191,818 + +0.2 191,818 + +0.7 191,818 + +0.3 191,826 - -0.7 191,826 - -0.2 191,866 - -1.8 191,881 + -0.8 192,051 - PGA1_262p01750 0.19 -0.7 192,155 - PGA1_262p01750 0.25 -0.1 192,178 - PGA1_262p01750 0.26 +0.6 192,196 + PGA1_262p01750 0.27 -0.5 192,223 + PGA1_262p01750 0.29 +0.9 192,274 + PGA1_262p01750 0.32 +0.5 192,388 + PGA1_262p01750 0.39 +0.2 192,396 - PGA1_262p01750 0.40 +0.5 192,412 + PGA1_262p01750 0.41 +1.1 192,446 + PGA1_262p01750 0.43 -0.7 192,560 + PGA1_262p01750 0.50 +0.1 192,560 + PGA1_262p01750 0.50 -0.0 192,629 + PGA1_262p01750 0.54 -1.8 192,637 - PGA1_262p01750 0.54 +0.7 192,637 - PGA1_262p01750 0.54 +1.3 192,668 + PGA1_262p01750 0.56 +2.5
Or see this region's nucleotide sequence