Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00670 and PGA1_262p00680 are separated by 108 nucleotides PGA1_262p00680 and PGA1_262p00690 are separated by 161 nucleotides
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
PGA1_262p00680: PGA1_262p00680 - Uncharacterized membrane protein, at 78,782 to 79,336
_262p00680
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1
2 at 77.826 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.940 kb on - strand, within PGA1_262p00670 at 77.975 kb on - strand, within PGA1_262p00670 at 77.977 kb on + strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.123 kb on - strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.175 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.271 kb on - strand, within PGA1_262p00670 at 78.366 kb on - strand, within PGA1_262p00670 at 78.367 kb on - strand, within PGA1_262p00670 at 78.431 kb on + strand, within PGA1_262p00670 at 78.439 kb on - strand, within PGA1_262p00670 at 78.498 kb on - strand, within PGA1_262p00670 at 78.537 kb on - strand, within PGA1_262p00670 at 78.825 kb on + strand at 78.830 kb on + strand at 78.838 kb on - strand, within PGA1_262p00680 at 78.838 kb on - strand, within PGA1_262p00680 at 79.096 kb on + strand, within PGA1_262p00680 at 79.210 kb on - strand, within PGA1_262p00680 at 79.229 kb on - strand, within PGA1_262p00680 at 79.261 kb on - strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.349 kb on - strand at 79.451 kb on - strand at 79.493 kb on - strand at 79.514 kb on + strand at 79.514 kb on + strand at 79.539 kb on + strand at 79.602 kb on - strand, within PGA1_262p00690 at 79.636 kb on - strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.641 kb on - strand, within PGA1_262p00690 at 79.646 kb on - strand, within PGA1_262p00690 at 79.688 kb on - strand, within PGA1_262p00690 at 79.705 kb on - strand, within PGA1_262p00690 at 79.751 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.783 kb on - strand, within PGA1_262p00690 at 79.822 kb on + strand, within PGA1_262p00690 at 80.023 kb on + strand, within PGA1_262p00690 at 80.116 kb on - strand, within PGA1_262p00690 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 77,826 + PGA1_262p00670 0.37 +0.2 77,932 + PGA1_262p00670 0.45 -0.5 77,932 + PGA1_262p00670 0.45 +0.6 77,940 - PGA1_262p00670 0.46 +1.0 77,975 - PGA1_262p00670 0.48 -0.9 77,977 + PGA1_262p00670 0.48 +0.1 78,082 - PGA1_262p00670 0.56 +0.5 78,082 - PGA1_262p00670 0.56 +0.9 78,123 - PGA1_262p00670 0.59 +0.6 78,167 + PGA1_262p00670 0.62 +1.1 78,167 + PGA1_262p00670 0.62 +1.2 78,175 - PGA1_262p00670 0.63 +0.9 78,242 - PGA1_262p00670 0.68 -0.3 78,242 - PGA1_262p00670 0.68 +0.5 78,263 + PGA1_262p00670 0.69 +0.1 78,263 + PGA1_262p00670 0.69 +0.5 78,271 - PGA1_262p00670 0.70 -0.5 78,366 - PGA1_262p00670 0.77 +0.7 78,367 - PGA1_262p00670 0.77 +0.5 78,431 + PGA1_262p00670 0.82 +0.7 78,439 - PGA1_262p00670 0.83 -1.7 78,498 - PGA1_262p00670 0.87 -0.5 78,537 - PGA1_262p00670 0.90 +0.3 78,825 + +1.3 78,830 + +1.0 78,838 - PGA1_262p00680 0.10 +0.1 78,838 - PGA1_262p00680 0.10 +1.5 79,096 + PGA1_262p00680 0.57 +0.2 79,210 - PGA1_262p00680 0.77 -0.5 79,229 - PGA1_262p00680 0.81 -0.1 79,261 - PGA1_262p00680 0.86 -1.3 79,279 + PGA1_262p00680 0.90 +0.0 79,279 + PGA1_262p00680 0.90 +1.7 79,349 - -0.1 79,451 - +0.7 79,493 - +1.0 79,514 + -0.9 79,514 + +2.3 79,539 + +0.2 79,602 - PGA1_262p00690 0.12 +0.9 79,636 - PGA1_262p00690 0.16 +0.3 79,638 + PGA1_262p00690 0.16 -0.8 79,638 + PGA1_262p00690 0.16 +1.1 79,641 - PGA1_262p00690 0.16 -0.1 79,646 - PGA1_262p00690 0.17 +0.5 79,688 - PGA1_262p00690 0.22 +0.9 79,705 - PGA1_262p00690 0.24 +0.2 79,751 + PGA1_262p00690 0.29 +1.1 79,775 + PGA1_262p00690 0.32 -0.9 79,775 + PGA1_262p00690 0.32 -0.2 79,783 - PGA1_262p00690 0.33 -1.5 79,822 + PGA1_262p00690 0.37 +0.6 80,023 + PGA1_262p00690 0.60 -0.5 80,116 - PGA1_262p00690 0.71 +0.8 80,239 - PGA1_262p00690 0.85 -0.2 80,334 - -0.2
Or see this region's nucleotide sequence