Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35980 and PGA1_c35990 overlap by 1 nucleotides PGA1_c35990 and PGA1_c36000 are separated by 24 nucleotides PGA1_c36000 and PGA1_c36010 are separated by 15 nucleotides
PGA1_c35980: PGA1_c35980 - lipopolysaccharide export system ATP-binding protein LptB, at 3,766,950 to 3,767,708
_c35980
PGA1_c35990: PGA1_c35990 - OstA-like protein, similar to lipopolysaccharide export system protein LptA, at 3,767,708 to 3,768,187
_c35990
PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811
_c36000
PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798
_c36010
Position (kb)
3767
3768
3769 Strain fitness (log2 ratio)
-2
-1
0
1 at 3766.717 kb on + strand at 3766.720 kb on - strand at 3766.736 kb on + strand at 3766.761 kb on - strand at 3766.761 kb on - strand at 3766.799 kb on - strand at 3766.864 kb on - strand at 3766.875 kb on + strand at 3766.943 kb on + strand at 3766.948 kb on + strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 3,766,717 + -1.9 3,766,720 - -0.1 3,766,736 + -0.3 3,766,761 - -0.8 3,766,761 - -1.9 3,766,799 - -2.5 3,766,864 - +1.0 3,766,875 + +0.4 3,766,943 + -0.8 3,766,948 + -0.8 3,768,832 - -1.3 3,768,832 - -1.3 3,768,832 - -1.2 3,768,832 - +0.1
Or see this region's nucleotide sequence