Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34270 and PGA1_c34280 are separated by 112 nucleotides PGA1_c34280 and PGA1_c34290 overlap by 4 nucleotides PGA1_c34290 and PGA1_c34300 are separated by 93 nucleotides
PGA1_c34270: PGA1_c34270 - putative integral membrane protein, at 3,592,272 to 3,593,156
_c34270
PGA1_c34280: PGA1_c34280 - peptide methionine sulfoxide reductase MsrB, at 3,593,269 to 3,593,718
_c34280
PGA1_c34290: PGA1_c34290 - peptide methionine sulfoxide reductase MsrA, at 3,593,715 to 3,594,236
_c34290
PGA1_c34300: PGA1_c34300 - hydantoinase / oxoprolinase family protein, at 3,594,330 to 3,596,336
_c34300
Position (kb)
3593
3594 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3592.304 kb on - strand at 3592.308 kb on + strand at 3592.308 kb on + strand at 3592.308 kb on + strand at 3592.316 kb on - strand at 3592.316 kb on - strand at 3592.322 kb on - strand at 3592.334 kb on - strand at 3592.334 kb on - strand at 3592.351 kb on - strand at 3592.429 kb on + strand, within PGA1_c34270 at 3592.433 kb on - strand, within PGA1_c34270 at 3592.434 kb on + strand, within PGA1_c34270 at 3592.434 kb on + strand, within PGA1_c34270 at 3592.437 kb on - strand, within PGA1_c34270 at 3592.437 kb on - strand, within PGA1_c34270 at 3592.442 kb on - strand, within PGA1_c34270 at 3592.447 kb on - strand, within PGA1_c34270 at 3592.577 kb on + strand, within PGA1_c34270 at 3592.584 kb on - strand, within PGA1_c34270 at 3592.607 kb on + strand, within PGA1_c34270 at 3592.755 kb on - strand, within PGA1_c34270 at 3592.762 kb on + strand, within PGA1_c34270 at 3592.762 kb on + strand, within PGA1_c34270 at 3592.762 kb on + strand, within PGA1_c34270 at 3592.762 kb on + strand, within PGA1_c34270 at 3592.762 kb on + strand, within PGA1_c34270 at 3592.770 kb on - strand, within PGA1_c34270 at 3592.770 kb on - strand, within PGA1_c34270 at 3592.820 kb on - strand, within PGA1_c34270 at 3592.820 kb on - strand, within PGA1_c34270 at 3592.821 kb on + strand, within PGA1_c34270 at 3592.839 kb on - strand, within PGA1_c34270 at 3592.935 kb on - strand, within PGA1_c34270 at 3593.033 kb on + strand, within PGA1_c34270 at 3593.041 kb on - strand, within PGA1_c34270 at 3593.128 kb on + strand at 3593.138 kb on + strand at 3593.141 kb on - strand at 3593.196 kb on - strand at 3593.217 kb on - strand at 3593.228 kb on - strand at 3593.248 kb on - strand at 3593.263 kb on - strand at 3593.279 kb on + strand at 3593.287 kb on - strand at 3593.307 kb on - strand at 3593.307 kb on - strand at 3593.340 kb on - strand, within PGA1_c34280 at 3593.425 kb on + strand, within PGA1_c34280 at 3593.478 kb on - strand, within PGA1_c34280 at 3593.479 kb on - strand, within PGA1_c34280 at 3593.524 kb on - strand, within PGA1_c34280 at 3593.545 kb on - strand, within PGA1_c34280 at 3593.552 kb on - strand, within PGA1_c34280 at 3593.569 kb on + strand, within PGA1_c34280 at 3593.602 kb on - strand, within PGA1_c34280 at 3593.624 kb on - strand, within PGA1_c34280 at 3593.706 kb on + strand at 3593.725 kb on + strand at 3593.736 kb on + strand at 3593.969 kb on + strand, within PGA1_c34290 at 3594.044 kb on - strand, within PGA1_c34290 at 3594.070 kb on - strand, within PGA1_c34290 at 3594.161 kb on + strand, within PGA1_c34290 at 3594.175 kb on - strand, within PGA1_c34290 at 3594.217 kb on + strand at 3594.219 kb on - strand at 3594.310 kb on + strand at 3594.318 kb on - strand at 3594.321 kb on - strand at 3594.336 kb on - strand at 3594.336 kb on - strand at 3594.336 kb on - strand at 3594.360 kb on + strand at 3594.405 kb on + strand at 3594.434 kb on + strand at 3594.442 kb on + strand at 3594.450 kb on - strand at 3594.483 kb on - strand at 3594.483 kb on - strand at 3594.510 kb on + strand at 3594.510 kb on + strand at 3594.510 kb on + strand at 3594.518 kb on - strand at 3594.518 kb on - strand at 3594.518 kb on - strand at 3594.581 kb on - strand, within PGA1_c34300 at 3594.621 kb on + strand, within PGA1_c34300 at 3594.621 kb on + strand, within PGA1_c34300 at 3594.650 kb on + strand, within PGA1_c34300 at 3594.672 kb on - strand, within PGA1_c34300 at 3594.698 kb on - strand, within PGA1_c34300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 3,592,304 - -0.9 3,592,308 + -0.0 3,592,308 + +0.2 3,592,308 + +0.5 3,592,316 - -0.2 3,592,316 - -0.3 3,592,322 - +0.7 3,592,334 - +2.1 3,592,334 - -2.3 3,592,351 - -0.2 3,592,429 + PGA1_c34270 0.18 -0.9 3,592,433 - PGA1_c34270 0.18 +0.4 3,592,434 + PGA1_c34270 0.18 -1.6 3,592,434 + PGA1_c34270 0.18 +0.5 3,592,437 - PGA1_c34270 0.19 +0.1 3,592,437 - PGA1_c34270 0.19 +1.6 3,592,442 - PGA1_c34270 0.19 -1.3 3,592,447 - PGA1_c34270 0.20 -0.3 3,592,577 + PGA1_c34270 0.34 +0.1 3,592,584 - PGA1_c34270 0.35 +0.3 3,592,607 + PGA1_c34270 0.38 +0.8 3,592,755 - PGA1_c34270 0.55 +1.4 3,592,762 + PGA1_c34270 0.55 +0.2 3,592,762 + PGA1_c34270 0.55 +2.7 3,592,762 + PGA1_c34270 0.55 +0.8 3,592,762 + PGA1_c34270 0.55 +0.5 3,592,762 + PGA1_c34270 0.55 +0.4 3,592,770 - PGA1_c34270 0.56 +0.8 3,592,770 - PGA1_c34270 0.56 -1.6 3,592,820 - PGA1_c34270 0.62 +0.1 3,592,820 - PGA1_c34270 0.62 +0.5 3,592,821 + PGA1_c34270 0.62 +0.9 3,592,839 - PGA1_c34270 0.64 -0.4 3,592,935 - PGA1_c34270 0.75 -0.7 3,593,033 + PGA1_c34270 0.86 -0.3 3,593,041 - PGA1_c34270 0.87 -0.2 3,593,128 + -1.2 3,593,138 + -0.8 3,593,141 - -0.0 3,593,196 - +1.7 3,593,217 - +0.9 3,593,228 - -0.8 3,593,248 - +0.8 3,593,263 - -0.2 3,593,279 + +0.6 3,593,287 - -0.8 3,593,307 - +1.5 3,593,307 - +1.1 3,593,340 - PGA1_c34280 0.16 +0.6 3,593,425 + PGA1_c34280 0.35 -1.2 3,593,478 - PGA1_c34280 0.46 +1.1 3,593,479 - PGA1_c34280 0.47 +0.0 3,593,524 - PGA1_c34280 0.57 -0.2 3,593,545 - PGA1_c34280 0.61 +0.2 3,593,552 - PGA1_c34280 0.63 +0.9 3,593,569 + PGA1_c34280 0.67 +0.5 3,593,602 - PGA1_c34280 0.74 -0.0 3,593,624 - PGA1_c34280 0.79 +0.5 3,593,706 + +0.4 3,593,725 + +0.7 3,593,736 + +0.6 3,593,969 + PGA1_c34290 0.49 +0.8 3,594,044 - PGA1_c34290 0.63 -0.1 3,594,070 - PGA1_c34290 0.68 +0.3 3,594,161 + PGA1_c34290 0.85 -2.3 3,594,175 - PGA1_c34290 0.88 +2.1 3,594,217 + +0.0 3,594,219 - +1.1 3,594,310 + -1.3 3,594,318 - -0.1 3,594,321 - +1.0 3,594,336 - -0.1 3,594,336 - +2.4 3,594,336 - +0.1 3,594,360 + +0.2 3,594,405 + +0.5 3,594,434 + -0.1 3,594,442 + +1.0 3,594,450 - -0.3 3,594,483 - -0.1 3,594,483 - +0.4 3,594,510 + -1.8 3,594,510 + -1.6 3,594,510 + -1.3 3,594,518 - +0.6 3,594,518 - -0.8 3,594,518 - +0.2 3,594,581 - PGA1_c34300 0.13 -0.2 3,594,621 + PGA1_c34300 0.14 +0.4 3,594,621 + PGA1_c34300 0.14 +1.2 3,594,650 + PGA1_c34300 0.16 +0.8 3,594,672 - PGA1_c34300 0.17 +0.8 3,594,698 - PGA1_c34300 0.18 +0.5
Or see this region's nucleotide sequence