Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02570

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02550 and PGA1_c02560 overlap by 1 nucleotidesPGA1_c02560 and PGA1_c02570 overlap by 14 nucleotidesPGA1_c02570 and PGA1_c02580 are separated by 86 nucleotides PGA1_c02550: PGA1_c02550 - protocatechuate 3,4-dioxygenase alpha chain, at 240,131 to 240,775 _c02550 PGA1_c02560: PGA1_c02560 - protocatechuate 3,4-dioxygenase beta chain, at 240,775 to 241,500 _c02560 PGA1_c02570: PGA1_c02570 - putative 4-carboxymuconolactone decarboxylase PcaC, at 241,487 to 241,912 _c02570 PGA1_c02580: PGA1_c02580 - putative HTH-type transcriptional regulator pcaQ, at 241,999 to 242,916 _c02580 Position (kb) 241 242Strain fitness (log2 ratio) -2 -1 0 1 2at 240.565 kb on + strand, within PGA1_c02550at 240.605 kb on - strand, within PGA1_c02550at 240.613 kb on + strand, within PGA1_c02550at 240.613 kb on - strand, within PGA1_c02550at 240.643 kb on - strand, within PGA1_c02550at 240.650 kb on - strand, within PGA1_c02550at 240.665 kb on + strand, within PGA1_c02550at 240.700 kb on - strand, within PGA1_c02550at 240.720 kb on - strandat 240.736 kb on + strandat 240.736 kb on + strandat 240.737 kb on - strandat 240.744 kb on - strandat 240.786 kb on - strandat 240.812 kb on - strandat 240.892 kb on + strand, within PGA1_c02560at 240.897 kb on + strand, within PGA1_c02560at 240.903 kb on - strand, within PGA1_c02560at 240.938 kb on - strand, within PGA1_c02560at 240.973 kb on - strand, within PGA1_c02560at 240.975 kb on + strand, within PGA1_c02560at 240.983 kb on - strand, within PGA1_c02560at 240.990 kb on + strand, within PGA1_c02560at 240.998 kb on - strand, within PGA1_c02560at 240.998 kb on - strand, within PGA1_c02560at 241.036 kb on - strand, within PGA1_c02560at 241.042 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.067 kb on + strand, within PGA1_c02560at 241.067 kb on + strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.075 kb on - strand, within PGA1_c02560at 241.082 kb on - strand, within PGA1_c02560at 241.082 kb on - strand, within PGA1_c02560at 241.112 kb on + strand, within PGA1_c02560at 241.112 kb on + strand, within PGA1_c02560at 241.119 kb on + strand, within PGA1_c02560at 241.143 kb on + strand, within PGA1_c02560at 241.227 kb on + strand, within PGA1_c02560at 241.230 kb on - strand, within PGA1_c02560at 241.240 kb on - strand, within PGA1_c02560at 241.340 kb on + strand, within PGA1_c02560at 241.348 kb on - strand, within PGA1_c02560at 241.362 kb on + strand, within PGA1_c02560at 241.365 kb on - strand, within PGA1_c02560at 241.382 kb on + strand, within PGA1_c02560at 241.386 kb on + strand, within PGA1_c02560at 241.386 kb on + strand, within PGA1_c02560at 241.399 kb on - strand, within PGA1_c02560at 241.419 kb on + strand, within PGA1_c02560at 241.503 kb on - strandat 241.518 kb on - strandat 241.597 kb on + strand, within PGA1_c02570at 241.601 kb on + strand, within PGA1_c02570at 241.605 kb on - strand, within PGA1_c02570at 241.618 kb on + strand, within PGA1_c02570at 241.645 kb on - strand, within PGA1_c02570at 241.647 kb on - strand, within PGA1_c02570at 241.658 kb on + strand, within PGA1_c02570at 241.676 kb on - strand, within PGA1_c02570at 241.746 kb on + strand, within PGA1_c02570at 241.746 kb on + strand, within PGA1_c02570at 241.824 kb on + strand, within PGA1_c02570at 241.834 kb on + strand, within PGA1_c02570at 241.865 kb on - strand, within PGA1_c02570at 241.868 kb on - strand, within PGA1_c02570at 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.880 kb on + strandat 241.888 kb on - strandat 241.888 kb on - strandat 241.888 kb on - strandat 241.890 kb on + strandat 241.890 kb on + strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.898 kb on - strandat 241.958 kb on + strandat 241.966 kb on - strandat 241.966 kb on - strandat 241.966 kb on - strandat 242.030 kb on + strandat 242.099 kb on - strand, within PGA1_c02580at 242.100 kb on - strand, within PGA1_c02580at 242.177 kb on + strand, within PGA1_c02580at 242.185 kb on - strand, within PGA1_c02580at 242.205 kb on - strand, within PGA1_c02580at 242.236 kb on - strand, within PGA1_c02580at 242.285 kb on + strand, within PGA1_c02580at 242.351 kb on + strand, within PGA1_c02580at 242.351 kb on + strand, within PGA1_c02580at 242.429 kb on + strand, within PGA1_c02580at 242.434 kb on + strand, within PGA1_c02580at 242.442 kb on - strand, within PGA1_c02580at 242.513 kb on + strand, within PGA1_c02580at 242.519 kb on + strand, within PGA1_c02580at 242.651 kb on + strand, within PGA1_c02580at 242.718 kb on + strand, within PGA1_c02580at 242.761 kb on - strand, within PGA1_c02580at 242.764 kb on + strand, within PGA1_c02580at 242.830 kb on - strandat 242.852 kb on + strandat 242.854 kb on + strandat 242.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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240,565 + PGA1_c02550 0.67 -1.2
240,605 - PGA1_c02550 0.73 -0.1
240,613 + PGA1_c02550 0.75 -0.6
240,613 - PGA1_c02550 0.75 +1.3
240,643 - PGA1_c02550 0.79 +1.3
240,650 - PGA1_c02550 0.80 +0.9
240,665 + PGA1_c02550 0.83 +0.7
240,700 - PGA1_c02550 0.88 -1.1
240,720 - -1.7
240,736 + +1.2
240,736 + +0.1
240,737 - -1.8
240,744 - +1.0
240,786 - +2.1
240,812 - -0.5
240,892 + PGA1_c02560 0.16 +1.7
240,897 + PGA1_c02560 0.17 -0.4
240,903 - PGA1_c02560 0.18 +0.3
240,938 - PGA1_c02560 0.22 +1.7
240,973 - PGA1_c02560 0.27 +0.2
240,975 + PGA1_c02560 0.28 +1.5
240,983 - PGA1_c02560 0.29 +1.3
240,990 + PGA1_c02560 0.30 -1.3
240,998 - PGA1_c02560 0.31 -1.4
240,998 - PGA1_c02560 0.31 +0.6
241,036 - PGA1_c02560 0.36 -1.1
241,042 + PGA1_c02560 0.37 +0.2
241,061 + PGA1_c02560 0.39 +0.4
241,061 + PGA1_c02560 0.39 -1.2
241,061 + PGA1_c02560 0.39 -0.0
241,067 + PGA1_c02560 0.40 +0.4
241,067 + PGA1_c02560 0.40 +0.4
241,069 - PGA1_c02560 0.40 +1.7
241,069 - PGA1_c02560 0.40 -0.8
241,069 - PGA1_c02560 0.40 -0.7
241,069 - PGA1_c02560 0.40 +0.2
241,069 - PGA1_c02560 0.40 -0.7
241,075 - PGA1_c02560 0.41 -0.7
241,082 - PGA1_c02560 0.42 +0.7
241,082 - PGA1_c02560 0.42 +1.3
241,112 + PGA1_c02560 0.46 +1.0
241,112 + PGA1_c02560 0.46 -0.2
241,119 + PGA1_c02560 0.47 -0.8
241,143 + PGA1_c02560 0.51 +0.5
241,227 + PGA1_c02560 0.62 +0.2
241,230 - PGA1_c02560 0.63 -0.6
241,240 - PGA1_c02560 0.64 +0.2
241,340 + PGA1_c02560 0.78 +0.5
241,348 - PGA1_c02560 0.79 +0.3
241,362 + PGA1_c02560 0.81 +0.7
241,365 - PGA1_c02560 0.81 -0.7
241,382 + PGA1_c02560 0.84 -0.5
241,386 + PGA1_c02560 0.84 +0.7
241,386 + PGA1_c02560 0.84 +0.3
241,399 - PGA1_c02560 0.86 +1.2
241,419 + PGA1_c02560 0.89 -0.5
241,503 - -0.3
241,518 - +1.5
241,597 + PGA1_c02570 0.26 -0.8
241,601 + PGA1_c02570 0.27 -0.9
241,605 - PGA1_c02570 0.28 -0.6
241,618 + PGA1_c02570 0.31 +1.4
241,645 - PGA1_c02570 0.37 -0.1
241,647 - PGA1_c02570 0.38 +0.9
241,658 + PGA1_c02570 0.40 +0.3
241,676 - PGA1_c02570 0.44 -2.3
241,746 + PGA1_c02570 0.61 -0.8
241,746 + PGA1_c02570 0.61 -0.5
241,824 + PGA1_c02570 0.79 +0.7
241,834 + PGA1_c02570 0.81 -0.5
241,865 - PGA1_c02570 0.89 +2.1
241,868 - PGA1_c02570 0.89 +0.6
241,880 + +1.1
241,880 + -0.0
241,880 + +0.7
241,880 + -0.3
241,880 + +0.7
241,880 + -1.6
241,880 + +1.1
241,880 + +0.3
241,888 - +0.2
241,888 - -2.3
241,888 - -0.0
241,890 + -0.8
241,890 + +0.7
241,898 - -0.8
241,898 - -0.5
241,898 - +1.1
241,898 - -2.2
241,898 - +0.2
241,898 - -0.6
241,898 - -0.6
241,898 - -0.3
241,898 - +0.5
241,958 + -0.4
241,966 - -0.1
241,966 - -1.4
241,966 - +0.2
242,030 + -0.6
242,099 - PGA1_c02580 0.11 -1.7
242,100 - PGA1_c02580 0.11 -0.4
242,177 + PGA1_c02580 0.19 +0.6
242,185 - PGA1_c02580 0.20 +2.0
242,205 - PGA1_c02580 0.22 -0.2
242,236 - PGA1_c02580 0.26 -0.8
242,285 + PGA1_c02580 0.31 +0.5
242,351 + PGA1_c02580 0.38 -0.0
242,351 + PGA1_c02580 0.38 +1.4
242,429 + PGA1_c02580 0.47 -0.3
242,434 + PGA1_c02580 0.47 +0.2
242,442 - PGA1_c02580 0.48 +0.3
242,513 + PGA1_c02580 0.56 +0.9
242,519 + PGA1_c02580 0.57 -0.1
242,651 + PGA1_c02580 0.71 +0.1
242,718 + PGA1_c02580 0.78 -0.4
242,761 - PGA1_c02580 0.83 -0.5
242,764 + PGA1_c02580 0.83 -0.1
242,830 - -0.8
242,852 + +1.7
242,854 + +0.3
242,865 + -0.2

Or see this region's nucleotide sequence