Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3318 and Dsui_3319 are separated by 226 nucleotides Dsui_3319 and Dsui_3320 are separated by 6 nucleotides
Dsui_3318: Dsui_3318 - cytochrome c, mono- and diheme variants family, at 3,557,822 to 3,559,462
_3318
Dsui_3319: Dsui_3319 - uroporphyrin-III C-methyltransferase, at 3,559,689 to 3,560,486
_3319
Dsui_3320: Dsui_3320 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 3,560,493 to 3,561,413
_3320
Position (kb)
3559
3560
3561 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3558.689 kb on - strand, within Dsui_3318 at 3558.707 kb on + strand, within Dsui_3318 at 3558.727 kb on - strand, within Dsui_3318 at 3558.768 kb on + strand at 3558.859 kb on + strand, within Dsui_3318 at 3558.959 kb on - strand, within Dsui_3318 at 3558.959 kb on - strand, within Dsui_3318 at 3559.006 kb on + strand at 3559.014 kb on - strand, within Dsui_3318 at 3559.073 kb on + strand at 3559.146 kb on - strand, within Dsui_3318 at 3559.160 kb on - strand, within Dsui_3318 at 3559.170 kb on + strand, within Dsui_3318 at 3559.249 kb on - strand, within Dsui_3318 at 3559.260 kb on - strand, within Dsui_3318 at 3559.294 kb on - strand, within Dsui_3318 at 3559.301 kb on - strand at 3559.301 kb on - strand at 3559.327 kb on + strand at 3559.340 kb on - strand at 3559.340 kb on - strand at 3559.393 kb on - strand at 3559.417 kb on - strand at 3559.463 kb on + strand at 3559.476 kb on - strand at 3559.504 kb on - strand at 3559.504 kb on - strand at 3559.511 kb on - strand at 3559.533 kb on - strand at 3559.558 kb on - strand at 3559.607 kb on - strand at 3559.646 kb on + strand at 3559.651 kb on + strand at 3559.717 kb on + strand at 3559.719 kb on - strand at 3559.725 kb on - strand at 3559.888 kb on - strand at 3559.899 kb on - strand, within Dsui_3319 at 3559.906 kb on + strand, within Dsui_3319 at 3560.122 kb on + strand, within Dsui_3319 at 3560.196 kb on + strand, within Dsui_3319 at 3560.196 kb on + strand, within Dsui_3319 at 3560.204 kb on - strand at 3560.318 kb on - strand at 3560.323 kb on + strand, within Dsui_3319 at 3560.338 kb on + strand, within Dsui_3319 at 3560.342 kb on + strand, within Dsui_3319 at 3560.489 kb on - strand at 3560.508 kb on - strand at 3560.538 kb on - strand at 3560.541 kb on - strand at 3560.654 kb on - strand, within Dsui_3320 at 3560.721 kb on + strand, within Dsui_3320 at 3560.789 kb on + strand, within Dsui_3320 at 3560.830 kb on + strand, within Dsui_3320 at 3560.877 kb on - strand, within Dsui_3320 at 3560.966 kb on - strand, within Dsui_3320 at 3561.086 kb on + strand, within Dsui_3320 at 3561.141 kb on + strand at 3561.144 kb on - strand, within Dsui_3320 at 3561.152 kb on + strand, within Dsui_3320 at 3561.161 kb on + strand, within Dsui_3320 at 3561.199 kb on + strand at 3561.209 kb on + strand, within Dsui_3320 at 3561.217 kb on - strand, within Dsui_3320 at 3561.217 kb on - strand, within Dsui_3320 at 3561.437 kb on - strand at 3561.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 3,558,689 - Dsui_3318 0.53 +0.3 3,558,707 + Dsui_3318 0.54 -1.7 3,558,727 - Dsui_3318 0.55 +0.3 3,558,768 + -0.7 3,558,859 + Dsui_3318 0.63 -0.7 3,558,959 - Dsui_3318 0.69 +0.3 3,558,959 - Dsui_3318 0.69 +0.3 3,559,006 + -1.3 3,559,014 - Dsui_3318 0.73 +0.3 3,559,073 + +0.3 3,559,146 - Dsui_3318 0.81 -1.3 3,559,160 - Dsui_3318 0.82 +0.3 3,559,170 + Dsui_3318 0.82 +0.3 3,559,249 - Dsui_3318 0.87 -1.5 3,559,260 - Dsui_3318 0.88 -3.0 3,559,294 - Dsui_3318 0.90 -3.8 3,559,301 - +0.3 3,559,301 - -2.3 3,559,327 + -1.3 3,559,340 - +0.3 3,559,340 - -1.3 3,559,393 - -0.7 3,559,417 - +0.3 3,559,463 + +0.3 3,559,476 - -3.0 3,559,504 - +0.3 3,559,504 - +0.3 3,559,511 - +0.3 3,559,533 - +0.3 3,559,558 - -1.3 3,559,607 - +0.3 3,559,646 + +0.3 3,559,651 + -0.7 3,559,717 + -0.7 3,559,719 - -0.7 3,559,725 - -2.3 3,559,888 - +0.3 3,559,899 - Dsui_3319 0.26 +0.3 3,559,906 + Dsui_3319 0.27 -0.9 3,560,122 + Dsui_3319 0.54 -2.0 3,560,196 + Dsui_3319 0.64 -3.4 3,560,196 + Dsui_3319 0.64 +0.3 3,560,204 - +0.3 3,560,318 - +0.3 3,560,323 + Dsui_3319 0.79 +1.9 3,560,338 + Dsui_3319 0.81 -2.0 3,560,342 + Dsui_3319 0.82 -1.4 3,560,489 - -0.3 3,560,508 - -0.5 3,560,538 - +0.0 3,560,541 - -0.4 3,560,654 - Dsui_3320 0.17 +0.1 3,560,721 + Dsui_3320 0.25 -1.7 3,560,789 + Dsui_3320 0.32 -1.3 3,560,830 + Dsui_3320 0.37 +0.3 3,560,877 - Dsui_3320 0.42 -0.1 3,560,966 - Dsui_3320 0.51 -0.4 3,561,086 + Dsui_3320 0.64 -1.7 3,561,141 + +0.3 3,561,144 - Dsui_3320 0.71 +0.3 3,561,152 + Dsui_3320 0.72 -0.7 3,561,161 + Dsui_3320 0.73 -0.7 3,561,199 + +0.3 3,561,209 + Dsui_3320 0.78 -1.3 3,561,217 - Dsui_3320 0.79 -0.2 3,561,217 - Dsui_3320 0.79 -0.1 3,561,437 - -0.5 3,561,481 + -2.0
Or see this region's nucleotide sequence