Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3229 and Dsui_3230 are separated by 2 nucleotides Dsui_3230 and Dsui_3231 are separated by 66 nucleotides
Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590
_3229
Dsui_3230: Dsui_3230 - hypothetical protein, at 3,468,593 to 3,471,172
_3230
Dsui_3231: Dsui_3231 - hypothetical protein, at 3,471,239 to 3,474,592
_3231
Position (kb)
3468
3469
3470
3471
3472 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3467.617 kb on - strand at 3467.660 kb on - strand at 3467.667 kb on + strand at 3467.714 kb on + strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.763 kb on - strand, within Dsui_3229 at 3467.805 kb on + strand at 3467.812 kb on - strand, within Dsui_3229 at 3467.820 kb on + strand at 3467.828 kb on - strand, within Dsui_3229 at 3467.950 kb on + strand at 3468.133 kb on - strand, within Dsui_3229 at 3468.149 kb on + strand at 3468.861 kb on - strand, within Dsui_3230 at 3469.179 kb on + strand at 3469.206 kb on - strand, within Dsui_3230 at 3469.233 kb on - strand, within Dsui_3230 at 3469.260 kb on - strand, within Dsui_3230 at 3469.337 kb on + strand at 3469.414 kb on - strand, within Dsui_3230 at 3469.552 kb on - strand at 3469.576 kb on + strand, within Dsui_3230 at 3469.632 kb on - strand, within Dsui_3230 at 3469.632 kb on - strand, within Dsui_3230 at 3469.634 kb on - strand, within Dsui_3230 at 3469.695 kb on - strand, within Dsui_3230 at 3469.758 kb on - strand, within Dsui_3230 at 3469.836 kb on + strand at 3469.844 kb on - strand at 3469.994 kb on - strand, within Dsui_3230 at 3469.994 kb on - strand at 3470.131 kb on - strand, within Dsui_3230 at 3470.292 kb on - strand, within Dsui_3230 at 3470.331 kb on - strand, within Dsui_3230 at 3470.413 kb on + strand at 3470.472 kb on - strand, within Dsui_3230 at 3470.477 kb on - strand, within Dsui_3230 at 3470.583 kb on - strand, within Dsui_3230 at 3470.710 kb on - strand, within Dsui_3230 at 3470.760 kb on - strand, within Dsui_3230 at 3470.924 kb on - strand at 3470.973 kb on + strand at 3470.981 kb on - strand at 3471.041 kb on - strand at 3471.154 kb on + strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.333 kb on - strand at 3471.353 kb on - strand at 3471.433 kb on - strand at 3471.485 kb on + strand at 3471.493 kb on - strand at 3471.602 kb on - strand at 3471.718 kb on - strand at 3471.734 kb on + strand at 3471.901 kb on + strand at 3471.901 kb on + strand, within Dsui_3231
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 3,467,617 - -0.8 3,467,660 - -2.1 3,467,667 + +0.2 3,467,714 + -1.4 3,467,722 - +0.2 3,467,722 - +0.2 3,467,722 - -3.1 3,467,763 - Dsui_3229 0.12 -1.8 3,467,805 + -1.4 3,467,812 - Dsui_3229 0.17 -2.4 3,467,820 + -1.4 3,467,828 - Dsui_3229 0.19 -3.0 3,467,950 + +0.2 3,468,133 - Dsui_3229 0.51 -2.2 3,468,149 + +0.2 3,468,861 - Dsui_3230 0.10 -3.0 3,469,179 + -1.4 3,469,206 - Dsui_3230 0.24 -0.8 3,469,233 - Dsui_3230 0.25 -1.4 3,469,260 - Dsui_3230 0.26 -1.8 3,469,337 + -0.8 3,469,414 - Dsui_3230 0.32 -0.8 3,469,552 - -0.2 3,469,576 + Dsui_3230 0.38 -2.6 3,469,632 - Dsui_3230 0.40 -2.8 3,469,632 - Dsui_3230 0.40 -2.2 3,469,634 - Dsui_3230 0.40 -1.7 3,469,695 - Dsui_3230 0.43 -2.4 3,469,758 - Dsui_3230 0.45 -0.8 3,469,836 + -1.4 3,469,844 - +0.2 3,469,994 - Dsui_3230 0.54 -0.8 3,469,994 - +0.2 3,470,131 - Dsui_3230 0.60 -0.4 3,470,292 - Dsui_3230 0.66 -1.4 3,470,331 - Dsui_3230 0.67 -0.9 3,470,413 + +0.2 3,470,472 - Dsui_3230 0.73 -0.8 3,470,477 - Dsui_3230 0.73 -2.4 3,470,583 - Dsui_3230 0.77 -3.0 3,470,710 - Dsui_3230 0.82 -2.4 3,470,760 - Dsui_3230 0.84 -1.4 3,470,924 - -1.4 3,470,973 + +0.2 3,470,981 - -1.4 3,471,041 - -1.4 3,471,154 + +0.2 3,471,245 - -0.4 3,471,245 - -0.6 3,471,245 - -0.5 3,471,333 - -1.4 3,471,353 - +0.2 3,471,433 - -3.0 3,471,485 + +0.2 3,471,493 - -1.4 3,471,602 - +0.2 3,471,718 - +0.2 3,471,734 + -1.4 3,471,901 + +0.2 3,471,901 + Dsui_3231 0.20 -2.6
Or see this region's nucleotide sequence