Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3175 and Dsui_3176 overlap by 4 nucleotides Dsui_3176 and Dsui_3177 overlap by 4 nucleotides Dsui_3177 and Dsui_3178 overlap by 10 nucleotides
Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901
_3175
Dsui_3176: Dsui_3176 - RND family efflux transporter, MFP subunit, at 3,406,898 to 3,408,184
_3176
Dsui_3177: Dsui_3177 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,408,181 to 3,408,909
_3177
Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111
_3178
Position (kb)
3406
3407
3408
3409 Strain fitness (log2 ratio)
-2
-1
0
1 at 3405.909 kb on - strand at 3405.929 kb on + strand at 3405.962 kb on + strand, within Dsui_3175 at 3406.105 kb on - strand at 3406.515 kb on + strand, within Dsui_3175 at 3406.711 kb on + strand at 3406.779 kb on + strand at 3406.834 kb on + strand at 3406.871 kb on + strand at 3406.883 kb on + strand at 3406.984 kb on + strand at 3407.485 kb on + strand, within Dsui_3176 at 3407.496 kb on + strand at 3407.619 kb on + strand, within Dsui_3176 at 3408.046 kb on - strand at 3408.087 kb on + strand at 3408.159 kb on + strand at 3408.399 kb on + strand at 3408.407 kb on - strand at 3408.516 kb on - strand, within Dsui_3177 at 3408.518 kb on + strand, within Dsui_3177 at 3408.791 kb on - strand, within Dsui_3177 at 3408.925 kb on - strand at 3408.974 kb on + strand at 3408.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 3,405,909 - +0.2 3,405,929 + +0.2 3,405,962 + Dsui_3175 0.39 -0.6 3,406,105 - +0.2 3,406,515 + Dsui_3175 0.75 -2.6 3,406,711 + -1.4 3,406,779 + +0.2 3,406,834 + -1.8 3,406,871 + -0.8 3,406,883 + -0.8 3,406,984 + -2.6 3,407,485 + Dsui_3176 0.46 +0.2 3,407,496 + +0.2 3,407,619 + Dsui_3176 0.56 +0.2 3,408,046 - -0.8 3,408,087 + -0.8 3,408,159 + +0.2 3,408,399 + -0.8 3,408,407 - +0.2 3,408,516 - Dsui_3177 0.46 -1.4 3,408,518 + Dsui_3177 0.46 +0.2 3,408,791 - Dsui_3177 0.84 -1.4 3,408,925 - -1.4 3,408,974 + +0.2 3,408,977 - +0.2
Or see this region's nucleotide sequence