Strain Fitness in Dechlorosoma suillum PS around Dsui_3099

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3097 and Dsui_3098 overlap by 4 nucleotidesDsui_3098 and Dsui_3099 overlap by 4 nucleotidesDsui_3099 and Dsui_3100 are separated by 7 nucleotides Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552 _3097 Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211 _3098 Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188 _3099 Dsui_3100: Dsui_3100 - putative permease, at 3,318,196 to 3,319,125 _3100 Position (kb) 3317 3318 3319Strain fitness (log2 ratio) -3 -2 -1 0 1at 3316.342 kb on + strand, within Dsui_3097at 3316.342 kb on + strand, within Dsui_3097at 3316.350 kb on - strand, within Dsui_3097at 3316.350 kb on - strand, within Dsui_3097at 3316.350 kb on - strandat 3316.350 kb on - strandat 3316.529 kb on + strandat 3316.534 kb on + strandat 3316.534 kb on + strandat 3316.542 kb on - strandat 3316.554 kb on - strandat 3316.601 kb on - strandat 3316.726 kb on + strandat 3316.847 kb on - strand, within Dsui_3098at 3317.183 kb on + strandat 3317.362 kb on + strandat 3317.417 kb on + strandat 3317.425 kb on - strandat 3317.429 kb on + strand, within Dsui_3099at 3317.443 kb on + strandat 3317.566 kb on + strand, within Dsui_3099at 3317.690 kb on - strandat 3317.690 kb on - strandat 3317.695 kb on - strandat 3317.789 kb on + strand, within Dsui_3099at 3317.974 kb on + strand, within Dsui_3099at 3317.993 kb on + strand, within Dsui_3099at 3318.063 kb on + strand, within Dsui_3099at 3318.210 kb on + strandat 3318.210 kb on + strandat 3318.218 kb on - strandat 3318.218 kb on - strandat 3318.724 kb on + strandat 3319.004 kb on - strandat 3319.047 kb on + strandat 3319.166 kb on + strandat 3319.166 kb on + strandat 3319.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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3,316,342 + Dsui_3097 0.83 -0.1
3,316,342 + Dsui_3097 0.83 +0.0
3,316,350 - Dsui_3097 0.83 -2.9
3,316,350 - Dsui_3097 0.83 -1.3
3,316,350 - -2.3
3,316,350 - +0.3
3,316,529 + -2.0
3,316,534 + -0.7
3,316,534 + -1.7
3,316,542 - +0.3
3,316,554 - -1.3
3,316,601 - -1.7
3,316,726 + +0.3
3,316,847 - Dsui_3098 0.45 -1.7
3,317,183 + -1.3
3,317,362 + +0.3
3,317,417 + +0.3
3,317,425 - -1.3
3,317,429 + Dsui_3099 0.23 -2.0
3,317,443 + -0.7
3,317,566 + Dsui_3099 0.36 -0.7
3,317,690 - +0.3
3,317,690 - -2.3
3,317,695 - -1.3
3,317,789 + Dsui_3099 0.59 -1.7
3,317,974 + Dsui_3099 0.78 -3.0
3,317,993 + Dsui_3099 0.80 -1.0
3,318,063 + Dsui_3099 0.87 -2.7
3,318,210 + -1.3
3,318,210 + -0.7
3,318,218 - -0.7
3,318,218 - -1.3
3,318,724 + +0.3
3,319,004 - -0.7
3,319,047 + +0.3
3,319,166 + -1.3
3,319,166 + -0.7
3,319,166 + -0.7

Or see this region's nucleotide sequence