Strain Fitness in Dechlorosoma suillum PS around Dsui_2975

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2974 and Dsui_2975 are separated by 9 nucleotidesDsui_2975 and Dsui_2976 are separated by 164 nucleotides Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438 _2974 Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874 _2975 Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058 _2976 Position (kb) 3180 3181 3182 3183Strain fitness (log2 ratio) -3 -2 -1 0 1at 3179.509 kb on - strand, within Dsui_2974at 3179.509 kb on - strand, within Dsui_2974at 3179.612 kb on - strand, within Dsui_2974at 3179.625 kb on - strand, within Dsui_2974at 3179.637 kb on + strand, within Dsui_2974at 3179.734 kb on + strandat 3179.766 kb on + strand, within Dsui_2974at 3179.856 kb on - strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3180.019 kb on - strandat 3180.019 kb on - strandat 3180.057 kb on + strand, within Dsui_2974at 3180.057 kb on + strandat 3180.071 kb on - strand, within Dsui_2974at 3180.221 kb on - strand, within Dsui_2974at 3180.356 kb on + strandat 3180.364 kb on - strandat 3180.472 kb on + strandat 3180.627 kb on - strandat 3180.876 kb on - strand, within Dsui_2975at 3180.881 kb on - strandat 3180.954 kb on + strandat 3181.058 kb on + strandat 3181.091 kb on + strand, within Dsui_2975at 3181.249 kb on - strand, within Dsui_2975at 3181.249 kb on - strand, within Dsui_2975at 3181.269 kb on - strand, within Dsui_2975at 3181.336 kb on - strand, within Dsui_2975at 3181.362 kb on - strand, within Dsui_2975at 3181.367 kb on - strand, within Dsui_2975at 3181.428 kb on - strand, within Dsui_2975at 3181.429 kb on - strandat 3181.563 kb on + strandat 3181.696 kb on + strand, within Dsui_2975at 3181.800 kb on - strand, within Dsui_2975at 3181.960 kb on - strand, within Dsui_2975at 3181.962 kb on + strandat 3181.971 kb on - strand, within Dsui_2975at 3181.976 kb on - strand, within Dsui_2975at 3182.195 kb on - strandat 3182.225 kb on + strandat 3182.247 kb on + strand, within Dsui_2975at 3182.254 kb on + strandat 3182.255 kb on - strandat 3182.341 kb on - strand, within Dsui_2975at 3182.379 kb on - strand, within Dsui_2975at 3182.542 kb on - strand, within Dsui_2975at 3182.689 kb on - strandat 3182.902 kb on - strandat 3182.919 kb on - strandat 3182.929 kb on - strandat 3182.931 kb on + strandat 3182.939 kb on - strandat 3183.114 kb on - strandat 3183.184 kb on - strand, within Dsui_2976at 3183.358 kb on + strandat 3183.364 kb on + strandat 3183.419 kb on - strand, within Dsui_2976at 3183.503 kb on - strand, within Dsui_2976at 3183.560 kb on - strand, within Dsui_2976at 3183.584 kb on - strand, within Dsui_2976at 3183.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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3,179,509 - Dsui_2974 0.27 -0.7
3,179,509 - Dsui_2974 0.27 -2.7
3,179,612 - Dsui_2974 0.35 -2.0
3,179,625 - Dsui_2974 0.36 -1.3
3,179,637 + Dsui_2974 0.37 +0.3
3,179,734 + +0.3
3,179,766 + Dsui_2974 0.47 +0.3
3,179,856 - Dsui_2974 0.54 -0.7
3,179,941 + Dsui_2974 0.61 +0.3
3,179,941 + Dsui_2974 0.61 -2.3
3,180,019 - +0.3
3,180,019 - +0.3
3,180,057 + Dsui_2974 0.70 -2.3
3,180,057 + +0.3
3,180,071 - Dsui_2974 0.71 +0.3
3,180,221 - Dsui_2974 0.83 -0.7
3,180,356 + +0.3
3,180,364 - -0.7
3,180,472 + -0.7
3,180,627 - -1.7
3,180,876 - Dsui_2975 0.18 -1.3
3,180,881 - -0.7
3,180,954 + +0.3
3,181,058 + +0.3
3,181,091 + Dsui_2975 0.26 +0.3
3,181,249 - Dsui_2975 0.33 -1.3
3,181,249 - Dsui_2975 0.33 -1.3
3,181,269 - Dsui_2975 0.34 -1.3
3,181,336 - Dsui_2975 0.37 -0.7
3,181,362 - Dsui_2975 0.38 -1.7
3,181,367 - Dsui_2975 0.38 -2.7
3,181,428 - Dsui_2975 0.40 -0.7
3,181,429 - +0.3
3,181,563 + +0.3
3,181,696 + Dsui_2975 0.51 -2.3
3,181,800 - Dsui_2975 0.56 -3.6
3,181,960 - Dsui_2975 0.62 -1.7
3,181,962 + -1.3
3,181,971 - Dsui_2975 0.63 -3.7
3,181,976 - Dsui_2975 0.63 +0.3
3,182,195 - +0.3
3,182,225 + -0.7
3,182,247 + Dsui_2975 0.74 -1.7
3,182,254 + +0.3
3,182,255 - -0.7
3,182,341 - Dsui_2975 0.78 -1.7
3,182,379 - Dsui_2975 0.80 -0.7
3,182,542 - Dsui_2975 0.86 -0.7
3,182,689 - +0.3
3,182,902 - +0.3
3,182,919 - -1.0
3,182,929 - -0.1
3,182,931 + -0.7
3,182,939 - -0.3
3,183,114 - +0.2
3,183,184 - Dsui_2976 0.14 -0.5
3,183,358 + +0.3
3,183,364 + -0.7
3,183,419 - Dsui_2976 0.37 -0.7
3,183,503 - Dsui_2976 0.45 -0.5
3,183,560 - Dsui_2976 0.51 +0.0
3,183,584 - Dsui_2976 0.53 +0.2
3,183,733 + +0.3

Or see this region's nucleotide sequence