Strain Fitness in Dechlorosoma suillum PS around Dsui_2900

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2898 and Dsui_2899 are separated by 42 nucleotidesDsui_2899 and Dsui_2900 overlap by 4 nucleotidesDsui_2900 and Dsui_2901 are separated by 62 nucleotides Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113 _2898 Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034 _2899 Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515 _2900 Dsui_2901: Dsui_2901 - nicotinate-nucleotide pyrophosphorylase, at 3,104,578 to 3,105,462 _2901 Position (kb) 3103 3104 3105Strain fitness (log2 ratio) -2 -1 0 1at 3102.045 kb on - strandat 3102.224 kb on + strandat 3102.236 kb on + strandat 3102.270 kb on + strand, within Dsui_2899at 3102.333 kb on - strandat 3102.344 kb on - strandat 3102.433 kb on + strand, within Dsui_2899at 3102.479 kb on + strand, within Dsui_2899at 3102.581 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.620 kb on - strandat 3102.623 kb on + strand, within Dsui_2899at 3102.643 kb on + strand, within Dsui_2899at 3102.724 kb on - strandat 3102.787 kb on + strand, within Dsui_2899at 3102.795 kb on - strandat 3102.797 kb on - strand, within Dsui_2899at 3102.800 kb on - strandat 3103.050 kb on + strandat 3103.203 kb on + strand, within Dsui_2900at 3103.211 kb on - strand, within Dsui_2900at 3103.312 kb on + strand, within Dsui_2900at 3103.320 kb on - strand, within Dsui_2900at 3103.520 kb on + strand, within Dsui_2900at 3103.961 kb on - strand, within Dsui_2900at 3103.992 kb on - strand, within Dsui_2900at 3104.030 kb on + strandat 3104.032 kb on - strand, within Dsui_2900at 3104.104 kb on - strand, within Dsui_2900at 3104.105 kb on - strandat 3104.115 kb on - strand, within Dsui_2900at 3104.116 kb on + strandat 3104.212 kb on + strandat 3104.268 kb on + strand, within Dsui_2900at 3104.302 kb on + strandat 3104.425 kb on + strandat 3104.433 kb on - strandat 3104.440 kb on - strandat 3104.473 kb on + strandat 3104.585 kb on + strandat 3105.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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3,102,045 - -1.3
3,102,224 + -0.2
3,102,236 + -0.7
3,102,270 + Dsui_2899 0.13 -0.6
3,102,333 - -0.7
3,102,344 - +0.3
3,102,433 + Dsui_2899 0.32 -2.1
3,102,479 + Dsui_2899 0.37 +0.1
3,102,581 + Dsui_2899 0.48 -0.5
3,102,618 + Dsui_2899 0.53 -0.7
3,102,618 + Dsui_2899 0.53 -0.2
3,102,620 - +0.3
3,102,623 + Dsui_2899 0.53 +0.0
3,102,643 + Dsui_2899 0.55 -0.2
3,102,724 - +0.3
3,102,787 + Dsui_2899 0.72 -0.2
3,102,795 - +0.3
3,102,797 - Dsui_2899 0.73 -0.7
3,102,800 - -0.7
3,103,050 + -0.4
3,103,203 + Dsui_2900 0.12 -0.1
3,103,211 - Dsui_2900 0.12 -1.3
3,103,312 + Dsui_2900 0.19 -1.3
3,103,320 - Dsui_2900 0.19 -2.3
3,103,520 + Dsui_2900 0.33 -1.7
3,103,961 - Dsui_2900 0.63 +0.3
3,103,992 - Dsui_2900 0.65 -1.7
3,104,030 + +0.3
3,104,032 - Dsui_2900 0.67 -1.3
3,104,104 - Dsui_2900 0.72 -1.7
3,104,105 - +0.3
3,104,115 - Dsui_2900 0.73 +0.6
3,104,116 + -0.7
3,104,212 + +0.3
3,104,268 + Dsui_2900 0.83 +0.3
3,104,302 + +0.3
3,104,425 + +0.3
3,104,433 - -0.7
3,104,440 - -0.7
3,104,473 + -0.7
3,104,585 + -0.4
3,105,511 - -0.7

Or see this region's nucleotide sequence