Strain Fitness in Dechlorosoma suillum PS around Dsui_2891

Experiment: ALP with Bacitracin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2890 and Dsui_2891 are separated by 21 nucleotidesDsui_2891 and Dsui_2892 are separated by 86 nucleotides Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103 _2890 Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532 _2891 Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596 _2892 Position (kb) 3088 3089Strain fitness (log2 ratio) -2 -1 0 1at 3087.166 kb on - strand, within Dsui_2890at 3087.225 kb on - strand, within Dsui_2890at 3087.490 kb on + strand, within Dsui_2890at 3087.498 kb on - strand, within Dsui_2890at 3087.714 kb on - strand, within Dsui_2890at 3087.778 kb on + strand, within Dsui_2890at 3087.873 kb on + strand, within Dsui_2890at 3087.942 kb on + strandat 3087.983 kb on - strandat 3088.067 kb on + strandat 3088.080 kb on - strandat 3088.143 kb on - strandat 3088.144 kb on - strandat 3088.229 kb on + strand, within Dsui_2891at 3088.420 kb on + strand, within Dsui_2891at 3088.444 kb on + strand, within Dsui_2891at 3088.449 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
remove
3,087,166 - Dsui_2890 0.51 -0.7
3,087,225 - Dsui_2890 0.54 -0.7
3,087,490 + Dsui_2890 0.68 -2.0
3,087,498 - Dsui_2890 0.69 +0.3
3,087,714 - Dsui_2890 0.80 -0.7
3,087,778 + Dsui_2890 0.83 -0.7
3,087,873 + Dsui_2890 0.88 -0.7
3,087,942 + -2.0
3,087,983 - -1.8
3,088,067 + -1.3
3,088,080 - -0.6
3,088,143 - -0.2
3,088,144 - -0.2
3,088,229 + Dsui_2891 0.25 +0.3
3,088,420 + Dsui_2891 0.72 +0.3
3,088,444 + Dsui_2891 0.78 +0.3
3,088,449 + +0.3

Or see this region's nucleotide sequence