Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2801 and Dsui_2802 are separated by 132 nucleotides Dsui_2802 and Dsui_2803 are separated by 82 nucleotides Dsui_2803 and Dsui_2804 are separated by 42 nucleotides
Dsui_2801: Dsui_2801 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,971,952 to 2,972,929
_2801
Dsui_2802: Dsui_2802 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 2,973,062 to 2,974,330
_2802
Dsui_2803: Dsui_2803 - GGDEF domain-containing protein, at 2,974,413 to 2,974,898
_2803
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Position (kb)
2973
2974
2975 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2972.063 kb on + strand at 2972.070 kb on + strand, within Dsui_2801 at 2972.070 kb on + strand, within Dsui_2801 at 2972.071 kb on - strand, within Dsui_2801 at 2972.080 kb on + strand at 2972.080 kb on + strand at 2972.088 kb on - strand, within Dsui_2801 at 2972.104 kb on - strand, within Dsui_2801 at 2972.182 kb on - strand, within Dsui_2801 at 2972.206 kb on - strand, within Dsui_2801 at 2972.246 kb on - strand, within Dsui_2801 at 2972.246 kb on - strand, within Dsui_2801 at 2972.246 kb on - strand, within Dsui_2801 at 2972.305 kb on - strand, within Dsui_2801 at 2972.442 kb on + strand, within Dsui_2801 at 2972.563 kb on + strand, within Dsui_2801 at 2972.571 kb on - strand, within Dsui_2801 at 2972.571 kb on - strand, within Dsui_2801 at 2972.672 kb on + strand at 2972.844 kb on + strand at 2972.862 kb on - strand at 2972.903 kb on - strand at 2972.918 kb on - strand at 2973.083 kb on + strand at 2973.160 kb on + strand at 2973.274 kb on - strand at 2973.387 kb on + strand, within Dsui_2802 at 2973.622 kb on - strand at 2973.859 kb on + strand, within Dsui_2802 at 2973.862 kb on + strand, within Dsui_2802 at 2973.873 kb on + strand, within Dsui_2802 at 2974.063 kb on + strand, within Dsui_2802 at 2974.112 kb on + strand, within Dsui_2802 at 2974.181 kb on + strand, within Dsui_2802 at 2974.210 kb on - strand at 2974.257 kb on - strand at 2974.273 kb on + strand at 2974.277 kb on + strand at 2974.290 kb on + strand at 2974.298 kb on - strand at 2974.408 kb on + strand at 2974.534 kb on + strand, within Dsui_2803 at 2974.536 kb on + strand, within Dsui_2803 at 2974.539 kb on - strand at 2974.561 kb on + strand, within Dsui_2803 at 2974.576 kb on + strand, within Dsui_2803 at 2974.603 kb on + strand, within Dsui_2803 at 2974.686 kb on + strand, within Dsui_2803 at 2974.695 kb on + strand, within Dsui_2803 at 2974.763 kb on - strand, within Dsui_2803 at 2974.777 kb on + strand, within Dsui_2803 at 2974.785 kb on - strand, within Dsui_2803 at 2974.785 kb on - strand, within Dsui_2803 at 2974.800 kb on - strand, within Dsui_2803 at 2974.803 kb on + strand, within Dsui_2803 at 2974.805 kb on - strand, within Dsui_2803 at 2974.863 kb on + strand at 2974.865 kb on - strand at 2975.124 kb on - strand, within Dsui_2804 at 2975.145 kb on + strand, within Dsui_2804 at 2975.205 kb on - strand, within Dsui_2804
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 2,972,063 + +0.4 2,972,070 + Dsui_2801 0.12 -0.6 2,972,070 + Dsui_2801 0.12 -0.6 2,972,071 - Dsui_2801 0.12 +0.4 2,972,080 + +0.4 2,972,080 + -0.6 2,972,088 - Dsui_2801 0.14 +0.2 2,972,104 - Dsui_2801 0.16 +0.1 2,972,182 - Dsui_2801 0.24 -0.3 2,972,206 - Dsui_2801 0.26 +0.2 2,972,246 - Dsui_2801 0.30 -0.2 2,972,246 - Dsui_2801 0.30 -0.6 2,972,246 - Dsui_2801 0.30 -0.2 2,972,305 - Dsui_2801 0.36 -0.7 2,972,442 + Dsui_2801 0.50 -1.2 2,972,563 + Dsui_2801 0.62 +0.4 2,972,571 - Dsui_2801 0.63 -1.1 2,972,571 - Dsui_2801 0.63 -0.5 2,972,672 + +0.4 2,972,844 + +0.4 2,972,862 - +0.1 2,972,903 - -1.2 2,972,918 - -0.2 2,973,083 + -0.9 2,973,160 + -0.0 2,973,274 - +0.4 2,973,387 + Dsui_2802 0.26 -0.6 2,973,622 - +0.4 2,973,859 + Dsui_2802 0.63 -0.5 2,973,862 + Dsui_2802 0.63 -2.8 2,973,873 + Dsui_2802 0.64 -1.6 2,974,063 + Dsui_2802 0.79 -0.4 2,974,112 + Dsui_2802 0.83 -0.5 2,974,181 + Dsui_2802 0.88 -0.7 2,974,210 - +0.4 2,974,257 - -0.6 2,974,273 + -1.2 2,974,277 + -0.1 2,974,290 + +1.6 2,974,298 - -0.6 2,974,408 + +1.0 2,974,534 + Dsui_2803 0.25 -0.4 2,974,536 + Dsui_2803 0.25 -0.9 2,974,539 - -0.6 2,974,561 + Dsui_2803 0.30 -2.6 2,974,576 + Dsui_2803 0.34 -1.2 2,974,603 + Dsui_2803 0.39 -0.0 2,974,686 + Dsui_2803 0.56 -1.9 2,974,695 + Dsui_2803 0.58 -0.2 2,974,763 - Dsui_2803 0.72 -1.6 2,974,777 + Dsui_2803 0.75 -1.4 2,974,785 - Dsui_2803 0.77 -2.9 2,974,785 - Dsui_2803 0.77 -2.4 2,974,800 - Dsui_2803 0.80 -1.2 2,974,803 + Dsui_2803 0.80 -1.2 2,974,805 - Dsui_2803 0.81 -1.6 2,974,863 + -0.6 2,974,865 - +0.4 2,975,124 - Dsui_2804 0.11 -0.3 2,975,145 + Dsui_2804 0.13 -1.6 2,975,205 - Dsui_2804 0.16 -0.6
Or see this region's nucleotide sequence