Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2662 and Dsui_2663 are separated by 21 nucleotides Dsui_2663 and Dsui_2664 are separated by 7 nucleotides Dsui_2664 and Dsui_2665 are separated by 106 nucleotides
Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817
_2662
Dsui_2663: Dsui_2663 - hypothetical protein, at 2,816,839 to 2,817,024
_2663
Dsui_2664: Dsui_2664 - hypothetical protein, at 2,817,032 to 2,817,352
_2664
Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313
_2665
Position (kb)
2816
2817
2818 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2815.848 kb on - strand at 2815.848 kb on - strand at 2815.929 kb on + strand at 2815.929 kb on + strand at 2815.988 kb on + strand at 2816.006 kb on - strand at 2816.065 kb on - strand, within Dsui_2662 at 2816.067 kb on + strand at 2816.075 kb on - strand, within Dsui_2662 at 2816.077 kb on - strand at 2816.160 kb on + strand, within Dsui_2662 at 2816.179 kb on - strand at 2816.209 kb on + strand at 2816.217 kb on - strand, within Dsui_2662 at 2816.217 kb on - strand at 2816.332 kb on + strand, within Dsui_2662 at 2816.333 kb on - strand, within Dsui_2662 at 2816.479 kb on + strand, within Dsui_2662 at 2816.498 kb on - strand, within Dsui_2662 at 2816.508 kb on + strand, within Dsui_2662 at 2816.512 kb on - strand, within Dsui_2662 at 2816.589 kb on - strand at 2816.599 kb on - strand at 2816.606 kb on - strand, within Dsui_2662 at 2816.642 kb on + strand, within Dsui_2662 at 2816.643 kb on - strand, within Dsui_2662 at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.779 kb on + strand at 2816.782 kb on - strand at 2816.787 kb on - strand at 2816.797 kb on - strand at 2816.830 kb on + strand at 2816.839 kb on - strand at 2816.929 kb on + strand, within Dsui_2663 at 2816.962 kb on - strand at 2816.971 kb on - strand, within Dsui_2663 at 2816.997 kb on + strand, within Dsui_2663 at 2817.031 kb on - strand at 2817.045 kb on - strand at 2817.103 kb on + strand at 2817.123 kb on - strand, within Dsui_2664 at 2817.167 kb on + strand at 2817.175 kb on - strand, within Dsui_2664 at 2817.226 kb on - strand, within Dsui_2664 at 2817.226 kb on - strand, within Dsui_2664 at 2817.519 kb on + strand at 2817.655 kb on - strand at 2817.672 kb on - strand at 2817.708 kb on + strand at 2817.716 kb on - strand at 2817.868 kb on + strand at 2817.882 kb on + strand at 2817.922 kb on + strand at 2817.923 kb on + strand, within Dsui_2665 at 2818.005 kb on + strand at 2818.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 2,815,848 - -0.4 2,815,848 - -0.6 2,815,929 + +0.3 2,815,929 + -1.5 2,815,988 + +0.3 2,816,006 - -1.3 2,816,065 - Dsui_2662 0.16 -1.3 2,816,067 + +0.3 2,816,075 - Dsui_2662 0.17 -0.7 2,816,077 - +0.3 2,816,160 + Dsui_2662 0.27 -0.6 2,816,179 - +0.3 2,816,209 + +0.3 2,816,217 - Dsui_2662 0.33 +0.3 2,816,217 - +0.3 2,816,332 + Dsui_2662 0.46 +0.8 2,816,333 - Dsui_2662 0.46 -1.7 2,816,479 + Dsui_2662 0.62 +0.1 2,816,498 - Dsui_2662 0.64 -1.7 2,816,508 + Dsui_2662 0.66 -0.0 2,816,512 - Dsui_2662 0.66 -2.0 2,816,589 - +0.3 2,816,599 - +0.3 2,816,606 - Dsui_2662 0.76 -0.7 2,816,642 + Dsui_2662 0.80 -1.7 2,816,643 - Dsui_2662 0.81 -1.7 2,816,738 + -1.3 2,816,738 + -0.0 2,816,779 + +0.9 2,816,782 - +0.3 2,816,787 - +0.3 2,816,797 - +0.3 2,816,830 + -1.1 2,816,839 - +0.3 2,816,929 + Dsui_2663 0.48 -0.5 2,816,962 - +0.3 2,816,971 - Dsui_2663 0.71 -1.7 2,816,997 + Dsui_2663 0.85 -2.9 2,817,031 - -0.7 2,817,045 - -2.5 2,817,103 + +0.3 2,817,123 - Dsui_2664 0.28 -0.1 2,817,167 + -0.7 2,817,175 - Dsui_2664 0.45 +0.1 2,817,226 - Dsui_2664 0.60 -0.1 2,817,226 - Dsui_2664 0.60 +0.2 2,817,519 + -0.7 2,817,655 - -1.3 2,817,672 - +0.3 2,817,708 + +0.3 2,817,716 - +0.3 2,817,868 + +0.3 2,817,882 + -0.7 2,817,922 + -0.7 2,817,923 + Dsui_2665 0.54 -1.7 2,818,005 + +0.3 2,818,013 - -0.7
Or see this region's nucleotide sequence