Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2487 and Dsui_2488 are separated by 7 nucleotides Dsui_2488 and Dsui_2489 are separated by 6 nucleotides
Dsui_2487: Dsui_2487 - hypothetical protein, at 2,636,061 to 2,637,569
_2487
Dsui_2488: Dsui_2488 - Protein of unknown function (DUF3293), at 2,637,577 to 2,638,059
_2488
Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286
_2489
Position (kb)
2637
2638
2639 Strain fitness (log2 ratio)
-2
-1
0
1 at 2636.651 kb on + strand, within Dsui_2487 at 2636.659 kb on - strand at 2636.683 kb on + strand, within Dsui_2487 at 2636.683 kb on + strand, within Dsui_2487 at 2636.728 kb on + strand, within Dsui_2487 at 2637.061 kb on + strand, within Dsui_2487 at 2637.069 kb on - strand at 2637.069 kb on - strand at 2637.071 kb on - strand at 2637.115 kb on - strand, within Dsui_2487 at 2637.148 kb on - strand at 2637.148 kb on - strand at 2637.162 kb on + strand, within Dsui_2487 at 2637.193 kb on - strand at 2637.348 kb on + strand, within Dsui_2487 at 2637.348 kb on + strand, within Dsui_2487 at 2637.450 kb on + strand at 2637.505 kb on - strand at 2637.538 kb on + strand at 2637.538 kb on + strand at 2637.559 kb on + strand at 2637.698 kb on + strand, within Dsui_2488 at 2637.756 kb on + strand, within Dsui_2488 at 2637.821 kb on + strand, within Dsui_2488 at 2637.821 kb on + strand, within Dsui_2488 at 2637.915 kb on - strand, within Dsui_2488 at 2637.924 kb on + strand, within Dsui_2488 at 2638.007 kb on + strand, within Dsui_2488 at 2638.023 kb on - strand at 2638.064 kb on + strand at 2638.098 kb on + strand at 2638.098 kb on + strand at 2638.098 kb on + strand at 2638.106 kb on - strand at 2638.106 kb on - strand at 2638.106 kb on - strand at 2638.176 kb on - strand at 2638.195 kb on - strand at 2638.214 kb on - strand, within Dsui_2489 at 2638.280 kb on - strand at 2638.393 kb on + strand at 2638.462 kb on - strand, within Dsui_2489 at 2638.462 kb on - strand, within Dsui_2489 at 2638.595 kb on + strand, within Dsui_2489 at 2638.636 kb on + strand, within Dsui_2489 at 2638.639 kb on + strand at 2638.689 kb on - strand, within Dsui_2489 at 2638.696 kb on - strand, within Dsui_2489 at 2638.840 kb on + strand, within Dsui_2489 at 2638.849 kb on + strand at 2638.972 kb on + strand, within Dsui_2489 at 2639.032 kb on - strand, within Dsui_2489 at 2639.033 kb on + strand, within Dsui_2489
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 2,636,651 + Dsui_2487 0.39 -2.3 2,636,659 - +0.3 2,636,683 + Dsui_2487 0.41 -1.7 2,636,683 + Dsui_2487 0.41 -1.3 2,636,728 + Dsui_2487 0.44 -0.5 2,637,061 + Dsui_2487 0.66 -0.7 2,637,069 - -1.3 2,637,069 - -1.3 2,637,071 - -0.7 2,637,115 - Dsui_2487 0.70 -1.7 2,637,148 - +0.3 2,637,148 - -0.7 2,637,162 + Dsui_2487 0.73 -1.0 2,637,193 - +0.3 2,637,348 + Dsui_2487 0.85 -0.3 2,637,348 + Dsui_2487 0.85 -0.9 2,637,450 + -0.5 2,637,505 - -0.7 2,637,538 + +0.6 2,637,538 + -1.6 2,637,559 + -0.5 2,637,698 + Dsui_2488 0.25 -0.6 2,637,756 + Dsui_2488 0.37 -2.7 2,637,821 + Dsui_2488 0.51 -0.7 2,637,821 + Dsui_2488 0.51 +0.3 2,637,915 - Dsui_2488 0.70 +0.3 2,637,924 + Dsui_2488 0.72 -1.3 2,638,007 + Dsui_2488 0.89 -2.3 2,638,023 - -1.7 2,638,064 + +0.3 2,638,098 + +0.3 2,638,098 + -0.7 2,638,098 + -0.7 2,638,106 - -0.7 2,638,106 - -1.7 2,638,106 - +0.3 2,638,176 - +0.3 2,638,195 - +0.3 2,638,214 - Dsui_2489 0.12 -0.7 2,638,280 - +0.3 2,638,393 + +0.3 2,638,462 - Dsui_2489 0.32 -2.0 2,638,462 - Dsui_2489 0.32 -0.7 2,638,595 + Dsui_2489 0.43 -0.7 2,638,636 + Dsui_2489 0.47 -0.7 2,638,639 + +0.3 2,638,689 - Dsui_2489 0.51 -2.7 2,638,696 - Dsui_2489 0.52 +0.3 2,638,840 + Dsui_2489 0.63 +0.3 2,638,849 + +0.3 2,638,972 + Dsui_2489 0.74 -2.5 2,639,032 - Dsui_2489 0.79 +0.3 2,639,033 + Dsui_2489 0.79 -0.7
Or see this region's nucleotide sequence