Strain Fitness in Dechlorosoma suillum PS around Dsui_2440

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2437 and Dsui_2438 overlap by 17 nucleotidesDsui_2438 and Dsui_2439 overlap by 22 nucleotidesDsui_2439 and Dsui_2440 are separated by 6 nucleotidesDsui_2440 and Dsui_2441 are separated by 9 nucleotidesDsui_2441 and Dsui_2442 are separated by 12 nucleotides Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179 _2437 Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819 _2438 Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148 _2439 Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141 _2440 Dsui_2441: Dsui_2441 - putative methyltransferase, at 2,602,151 to 2,602,879 _2441 Dsui_2442: Dsui_2442 - MAF protein, at 2,602,892 to 2,603,485 _2442 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -2 -1 0 1 2at 2600.210 kb on + strandat 2600.308 kb on + strand, within Dsui_2438at 2600.523 kb on + strand, within Dsui_2438at 2600.523 kb on + strand, within Dsui_2438at 2600.649 kb on + strand, within Dsui_2438at 2600.692 kb on + strand, within Dsui_2438at 2600.847 kb on - strandat 2600.919 kb on + strand, within Dsui_2439at 2600.924 kb on + strand, within Dsui_2439at 2600.997 kb on + strand, within Dsui_2439at 2601.006 kb on - strand, within Dsui_2439at 2601.010 kb on - strandat 2601.161 kb on + strandat 2601.212 kb on + strandat 2601.299 kb on - strand, within Dsui_2440at 2601.326 kb on + strand, within Dsui_2440at 2601.427 kb on + strand, within Dsui_2440at 2601.435 kb on - strand, within Dsui_2440at 2601.464 kb on + strand, within Dsui_2440at 2601.489 kb on + strand, within Dsui_2440at 2601.499 kb on + strand, within Dsui_2440at 2601.595 kb on + strand, within Dsui_2440at 2601.735 kb on + strand, within Dsui_2440at 2601.735 kb on + strand, within Dsui_2440at 2601.746 kb on + strand, within Dsui_2440at 2601.861 kb on + strand, within Dsui_2440at 2601.928 kb on + strand, within Dsui_2440at 2601.929 kb on + strand, within Dsui_2440at 2601.936 kb on - strand, within Dsui_2440at 2602.002 kb on - strand, within Dsui_2440at 2602.109 kb on - strandat 2602.188 kb on - strandat 2602.230 kb on - strand, within Dsui_2441at 2602.230 kb on - strand, within Dsui_2441at 2602.252 kb on + strand, within Dsui_2441at 2602.252 kb on + strand, within Dsui_2441at 2602.260 kb on - strand, within Dsui_2441at 2602.260 kb on - strand, within Dsui_2441at 2602.260 kb on - strand, within Dsui_2441at 2602.323 kb on - strand, within Dsui_2441at 2602.349 kb on - strand, within Dsui_2441at 2602.359 kb on - strand, within Dsui_2441at 2602.389 kb on + strand, within Dsui_2441at 2602.443 kb on + strand, within Dsui_2441at 2602.462 kb on + strand, within Dsui_2441at 2602.470 kb on - strand, within Dsui_2441at 2602.524 kb on + strand, within Dsui_2441at 2602.549 kb on + strand, within Dsui_2441at 2602.570 kb on + strand, within Dsui_2441at 2602.603 kb on + strand, within Dsui_2441at 2602.611 kb on - strand, within Dsui_2441at 2602.644 kb on - strand, within Dsui_2441at 2602.650 kb on + strand, within Dsui_2441at 2602.650 kb on + strand, within Dsui_2441at 2602.650 kb on + strand, within Dsui_2441at 2602.742 kb on - strand, within Dsui_2441at 2602.749 kb on + strand, within Dsui_2441at 2602.767 kb on + strand, within Dsui_2441at 2602.775 kb on - strand, within Dsui_2441at 2602.775 kb on - strand, within Dsui_2441at 2602.775 kb on - strand, within Dsui_2441at 2602.788 kb on + strand, within Dsui_2441at 2602.796 kb on - strand, within Dsui_2441at 2602.804 kb on + strand, within Dsui_2441at 2602.870 kb on - strandat 2602.915 kb on - strandat 2602.929 kb on - strandat 2602.946 kb on - strandat 2602.946 kb on - strandat 2603.033 kb on + strand, within Dsui_2442at 2603.033 kb on + strand, within Dsui_2442at 2603.033 kb on + strand, within Dsui_2442at 2603.033 kb on + strand, within Dsui_2442at 2603.041 kb on - strand, within Dsui_2442at 2603.109 kb on - strand, within Dsui_2442at 2603.109 kb on - strand, within Dsui_2442at 2603.112 kb on + strand, within Dsui_2442at 2603.133 kb on + strand, within Dsui_2442

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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2,600,210 + -0.3
2,600,308 + Dsui_2438 0.22 -0.6
2,600,523 + Dsui_2438 0.55 -0.2
2,600,523 + Dsui_2438 0.55 -0.1
2,600,649 + Dsui_2438 0.74 +0.2
2,600,692 + Dsui_2438 0.81 -0.3
2,600,847 - +0.3
2,600,919 + Dsui_2439 0.34 -0.2
2,600,924 + Dsui_2439 0.36 -0.1
2,600,997 + Dsui_2439 0.57 -0.5
2,601,006 - Dsui_2439 0.59 -1.3
2,601,010 - +0.3
2,601,161 + -1.1
2,601,212 + +0.3
2,601,299 - Dsui_2440 0.15 +0.3
2,601,326 + Dsui_2440 0.17 -0.9
2,601,427 + Dsui_2440 0.28 -1.7
2,601,435 - Dsui_2440 0.28 -0.7
2,601,464 + Dsui_2440 0.31 -1.7
2,601,489 + Dsui_2440 0.34 -1.0
2,601,499 + Dsui_2440 0.35 -2.6
2,601,595 + Dsui_2440 0.45 -1.5
2,601,735 + Dsui_2440 0.59 -1.9
2,601,735 + Dsui_2440 0.59 -1.4
2,601,746 + Dsui_2440 0.60 -0.9
2,601,861 + Dsui_2440 0.72 -0.6
2,601,928 + Dsui_2440 0.78 -0.6
2,601,929 + Dsui_2440 0.78 -1.8
2,601,936 - Dsui_2440 0.79 +0.3
2,602,002 - Dsui_2440 0.86 -2.7
2,602,109 - -2.0
2,602,188 - -1.0
2,602,230 - Dsui_2441 0.11 +0.3
2,602,230 - Dsui_2441 0.11 -1.3
2,602,252 + Dsui_2441 0.14 -0.1
2,602,252 + Dsui_2441 0.14 -0.3
2,602,260 - Dsui_2441 0.15 -1.7
2,602,260 - Dsui_2441 0.15 -2.7
2,602,260 - Dsui_2441 0.15 -2.5
2,602,323 - Dsui_2441 0.24 -1.3
2,602,349 - Dsui_2441 0.27 -0.7
2,602,359 - Dsui_2441 0.29 -1.3
2,602,389 + Dsui_2441 0.33 -0.2
2,602,443 + Dsui_2441 0.40 -0.4
2,602,462 + Dsui_2441 0.43 +0.2
2,602,470 - Dsui_2441 0.44 -1.7
2,602,524 + Dsui_2441 0.51 +0.6
2,602,549 + Dsui_2441 0.55 -0.7
2,602,570 + Dsui_2441 0.57 +0.3
2,602,603 + Dsui_2441 0.62 -1.7
2,602,611 - Dsui_2441 0.63 -1.7
2,602,644 - Dsui_2441 0.68 +0.9
2,602,650 + Dsui_2441 0.68 +1.9
2,602,650 + Dsui_2441 0.68 +0.3
2,602,650 + Dsui_2441 0.68 -0.7
2,602,742 - Dsui_2441 0.81 -2.0
2,602,749 + Dsui_2441 0.82 +0.3
2,602,767 + Dsui_2441 0.84 +0.3
2,602,775 - Dsui_2441 0.86 -1.7
2,602,775 - Dsui_2441 0.86 -1.7
2,602,775 - Dsui_2441 0.86 -0.7
2,602,788 + Dsui_2441 0.87 -1.3
2,602,796 - Dsui_2441 0.88 -1.3
2,602,804 + Dsui_2441 0.90 -1.7
2,602,870 - +0.3
2,602,915 - +0.3
2,602,929 - +0.3
2,602,946 - +0.3
2,602,946 - +0.3
2,603,033 + Dsui_2442 0.24 +0.3
2,603,033 + Dsui_2442 0.24 -1.3
2,603,033 + Dsui_2442 0.24 -1.3
2,603,033 + Dsui_2442 0.24 +0.3
2,603,041 - Dsui_2442 0.25 -1.4
2,603,109 - Dsui_2442 0.37 +0.3
2,603,109 - Dsui_2442 0.37 -0.7
2,603,112 + Dsui_2442 0.37 -0.7
2,603,133 + Dsui_2442 0.41 +0.3

Or see this region's nucleotide sequence