Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2167 and Dsui_2168 are separated by 61 nucleotides Dsui_2168 and Dsui_2169 are separated by 71 nucleotides Dsui_2169 and Dsui_2170 overlap by 4 nucleotides
Dsui_2167: Dsui_2167 - TonB-dependent siderophore receptor, at 2,302,772 to 2,305,192
_2167
Dsui_2168: Dsui_2168 - putative hydrolase of alpha/beta superfamily, at 2,305,254 to 2,306,219
_2168
Dsui_2169: Dsui_2169 - hypothetical protein, at 2,306,291 to 2,306,572
_2169
Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077
_2170
Position (kb)
2305
2306
2307 Strain fitness (log2 ratio)
-2
-1
0
1 at 2304.341 kb on - strand at 2304.358 kb on - strand at 2304.360 kb on - strand, within Dsui_2167 at 2304.384 kb on + strand, within Dsui_2167 at 2304.391 kb on - strand at 2304.515 kb on + strand at 2304.555 kb on - strand at 2304.555 kb on - strand at 2304.615 kb on - strand at 2304.685 kb on + strand at 2304.894 kb on + strand at 2304.900 kb on - strand at 2304.921 kb on + strand at 2304.923 kb on - strand at 2305.022 kb on - strand at 2305.107 kb on - strand at 2305.161 kb on + strand at 2305.191 kb on - strand at 2305.388 kb on + strand at 2305.596 kb on - strand at 2305.687 kb on - strand at 2306.214 kb on + strand at 2306.305 kb on + strand at 2306.407 kb on - strand at 2306.500 kb on + strand at 2306.838 kb on - strand at 2306.883 kb on - strand at 2306.938 kb on + strand, within Dsui_2170 at 2306.963 kb on + strand at 2307.021 kb on + strand at 2307.091 kb on - strand at 2307.109 kb on - strand, within Dsui_2170 at 2307.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 2,304,341 - -0.4 2,304,358 - +0.6 2,304,360 - Dsui_2167 0.66 +0.6 2,304,384 + Dsui_2167 0.67 -1.0 2,304,391 - +0.6 2,304,515 + -0.4 2,304,555 - +0.6 2,304,555 - +0.6 2,304,615 - -0.4 2,304,685 + +0.6 2,304,894 + +0.6 2,304,900 - -0.4 2,304,921 + -0.4 2,304,923 - -1.4 2,305,022 - -0.4 2,305,107 - +0.6 2,305,161 + -2.4 2,305,191 - -1.4 2,305,388 + -0.4 2,305,596 - -0.4 2,305,687 - +0.6 2,306,214 + +0.6 2,306,305 + -1.7 2,306,407 - +0.6 2,306,500 + +0.6 2,306,838 - +0.6 2,306,883 - -1.4 2,306,938 + Dsui_2170 0.24 -1.4 2,306,963 + +0.6 2,307,021 + +0.6 2,307,091 - +0.6 2,307,109 - Dsui_2170 0.36 +0.4 2,307,109 - +0.6
Or see this region's nucleotide sequence