Strain Fitness in Dechlorosoma suillum PS around Dsui_2077

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2076 and Dsui_2077 are separated by 96 nucleotidesDsui_2077 and Dsui_2078 are separated by 153 nucleotidesDsui_2078 and Dsui_2079 are separated by 135 nucleotides Dsui_2076: Dsui_2076 - cytochrome c, mono- and diheme variants family, at 2,195,004 to 2,196,734 _2076 Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312 _2077 Dsui_2078: Dsui_2078 - cytochrome c551/c552, at 2,198,466 to 2,198,774 _2078 Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745 _2079 Position (kb) 2196 2197 2198 2199Strain fitness (log2 ratio) -2 -1 0 1at 2195.872 kb on + strand, within Dsui_2076at 2195.872 kb on + strand, within Dsui_2076at 2195.880 kb on - strandat 2195.880 kb on - strand, within Dsui_2076at 2195.882 kb on + strandat 2195.903 kb on + strand, within Dsui_2076at 2196.011 kb on + strand, within Dsui_2076at 2196.016 kb on + strand, within Dsui_2076at 2196.019 kb on - strandat 2196.019 kb on - strand, within Dsui_2076at 2196.215 kb on - strandat 2196.354 kb on - strand, within Dsui_2076at 2196.410 kb on + strandat 2196.477 kb on - strandat 2196.479 kb on + strand, within Dsui_2076at 2196.520 kb on + strandat 2196.591 kb on + strandat 2196.738 kb on + strandat 2196.738 kb on + strandat 2196.976 kb on - strandat 2196.976 kb on - strandat 2197.023 kb on + strand, within Dsui_2077at 2197.071 kb on - strand, within Dsui_2077at 2197.071 kb on - strand, within Dsui_2077at 2197.143 kb on + strand, within Dsui_2077at 2197.160 kb on + strandat 2197.344 kb on + strandat 2197.344 kb on + strand, within Dsui_2077at 2197.428 kb on - strandat 2197.459 kb on + strand, within Dsui_2077at 2197.777 kb on + strand, within Dsui_2077at 2197.814 kb on + strand, within Dsui_2077at 2197.839 kb on + strand, within Dsui_2077at 2197.977 kb on + strand, within Dsui_2077at 2197.996 kb on + strand, within Dsui_2077at 2198.054 kb on - strandat 2198.069 kb on - strandat 2198.095 kb on + strand, within Dsui_2077at 2198.236 kb on - strandat 2198.265 kb on + strandat 2198.316 kb on - strandat 2198.320 kb on + strandat 2198.423 kb on + strandat 2198.426 kb on - strandat 2198.490 kb on - strandat 2198.538 kb on + strand, within Dsui_2078at 2198.543 kb on + strand, within Dsui_2078at 2198.543 kb on + strandat 2198.551 kb on - strand, within Dsui_2078at 2198.567 kb on - strand, within Dsui_2078at 2198.603 kb on + strandat 2198.624 kb on + strandat 2198.624 kb on + strand, within Dsui_2078at 2198.624 kb on + strand, within Dsui_2078at 2198.776 kb on + strandat 2198.986 kb on + strandat 2199.037 kb on + strandat 2199.091 kb on - strandat 2199.172 kb on - strandat 2199.179 kb on + strandat 2199.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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2,195,872 + Dsui_2076 0.50 -0.4
2,195,872 + Dsui_2076 0.50 -1.4
2,195,880 - +0.6
2,195,880 - Dsui_2076 0.51 -1.0
2,195,882 + -0.4
2,195,903 + Dsui_2076 0.52 +0.6
2,196,011 + Dsui_2076 0.58 -0.4
2,196,016 + Dsui_2076 0.58 -1.4
2,196,019 - -0.4
2,196,019 - Dsui_2076 0.59 -1.7
2,196,215 - -0.4
2,196,354 - Dsui_2076 0.78 -1.7
2,196,410 + +0.6
2,196,477 - -0.4
2,196,479 + Dsui_2076 0.85 -2.0
2,196,520 + -0.4
2,196,591 + -1.4
2,196,738 + +0.4
2,196,738 + -0.4
2,196,976 - +0.6
2,196,976 - -1.0
2,197,023 + Dsui_2077 0.13 -0.4
2,197,071 - Dsui_2077 0.16 -0.4
2,197,071 - Dsui_2077 0.16 +0.6
2,197,143 + Dsui_2077 0.21 -1.0
2,197,160 + +0.6
2,197,344 + +0.6
2,197,344 + Dsui_2077 0.35 -0.4
2,197,428 - +0.6
2,197,459 + Dsui_2077 0.42 +0.6
2,197,777 + Dsui_2077 0.64 -1.7
2,197,814 + Dsui_2077 0.66 -1.0
2,197,839 + Dsui_2077 0.68 +0.6
2,197,977 + Dsui_2077 0.77 +0.6
2,197,996 + Dsui_2077 0.79 -0.4
2,198,054 - +0.6
2,198,069 - +0.6
2,198,095 + Dsui_2077 0.85 -1.0
2,198,236 - -0.4
2,198,265 + -1.0
2,198,316 - -0.4
2,198,320 + +0.6
2,198,423 + -1.4
2,198,426 - -0.4
2,198,490 - -1.4
2,198,538 + Dsui_2078 0.23 -2.0
2,198,543 + Dsui_2078 0.25 -1.4
2,198,543 + -0.4
2,198,551 - Dsui_2078 0.28 -2.6
2,198,567 - Dsui_2078 0.33 -1.0
2,198,603 + -0.4
2,198,624 + +0.6
2,198,624 + Dsui_2078 0.51 +0.6
2,198,624 + Dsui_2078 0.51 -0.4
2,198,776 + -0.4
2,198,986 + -1.0
2,199,037 + +0.6
2,199,091 - -0.4
2,199,172 - +0.6
2,199,179 + +0.6
2,199,216 - +0.6

Or see this region's nucleotide sequence