Strain Fitness in Dechlorosoma suillum PS around Dsui_2076

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2075 and Dsui_2076 are separated by 220 nucleotidesDsui_2076 and Dsui_2077 are separated by 96 nucleotides Dsui_2075: Dsui_2075 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,193,620 to 2,194,783 _2075 Dsui_2076: Dsui_2076 - cytochrome c, mono- and diheme variants family, at 2,195,004 to 2,196,734 _2076 Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312 _2077 Position (kb) 2195 2196 2197Strain fitness (log2 ratio) -2 -1 0 1at 2194.178 kb on - strand, within Dsui_2075at 2194.193 kb on - strandat 2194.534 kb on + strandat 2194.754 kb on + strandat 2194.787 kb on - strandat 2194.871 kb on + strandat 2194.903 kb on - strandat 2195.026 kb on + strandat 2195.482 kb on + strandat 2195.490 kb on - strandat 2195.565 kb on - strandat 2195.599 kb on - strand, within Dsui_2076at 2195.872 kb on + strand, within Dsui_2076at 2195.872 kb on + strand, within Dsui_2076at 2195.880 kb on - strandat 2195.880 kb on - strand, within Dsui_2076at 2195.882 kb on + strandat 2195.903 kb on + strand, within Dsui_2076at 2196.011 kb on + strand, within Dsui_2076at 2196.016 kb on + strand, within Dsui_2076at 2196.019 kb on - strandat 2196.019 kb on - strand, within Dsui_2076at 2196.215 kb on - strandat 2196.354 kb on - strand, within Dsui_2076at 2196.410 kb on + strandat 2196.477 kb on - strandat 2196.479 kb on + strand, within Dsui_2076at 2196.520 kb on + strandat 2196.591 kb on + strandat 2196.738 kb on + strandat 2196.738 kb on + strandat 2196.976 kb on - strandat 2196.976 kb on - strandat 2197.023 kb on + strand, within Dsui_2077at 2197.071 kb on - strand, within Dsui_2077at 2197.071 kb on - strand, within Dsui_2077at 2197.143 kb on + strand, within Dsui_2077at 2197.160 kb on + strandat 2197.344 kb on + strandat 2197.344 kb on + strand, within Dsui_2077at 2197.428 kb on - strandat 2197.459 kb on + strand, within Dsui_2077

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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2,194,178 - Dsui_2075 0.48 -1.0
2,194,193 - +0.6
2,194,534 + +0.6
2,194,754 + -1.0
2,194,787 - -1.4
2,194,871 + +0.6
2,194,903 - +0.6
2,195,026 + +0.6
2,195,482 + +0.6
2,195,490 - +0.6
2,195,565 - -0.4
2,195,599 - Dsui_2076 0.34 +0.2
2,195,872 + Dsui_2076 0.50 -0.4
2,195,872 + Dsui_2076 0.50 -1.4
2,195,880 - +0.6
2,195,880 - Dsui_2076 0.51 -1.0
2,195,882 + -0.4
2,195,903 + Dsui_2076 0.52 +0.6
2,196,011 + Dsui_2076 0.58 -0.4
2,196,016 + Dsui_2076 0.58 -1.4
2,196,019 - -0.4
2,196,019 - Dsui_2076 0.59 -1.7
2,196,215 - -0.4
2,196,354 - Dsui_2076 0.78 -1.7
2,196,410 + +0.6
2,196,477 - -0.4
2,196,479 + Dsui_2076 0.85 -2.0
2,196,520 + -0.4
2,196,591 + -1.4
2,196,738 + +0.4
2,196,738 + -0.4
2,196,976 - +0.6
2,196,976 - -1.0
2,197,023 + Dsui_2077 0.13 -0.4
2,197,071 - Dsui_2077 0.16 -0.4
2,197,071 - Dsui_2077 0.16 +0.6
2,197,143 + Dsui_2077 0.21 -1.0
2,197,160 + +0.6
2,197,344 + +0.6
2,197,344 + Dsui_2077 0.35 -0.4
2,197,428 - +0.6
2,197,459 + Dsui_2077 0.42 +0.6

Or see this region's nucleotide sequence