Strain Fitness in Dechlorosoma suillum PS around Dsui_2029

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2027 and Dsui_2028 are separated by 100 nucleotidesDsui_2028 and Dsui_2029 are separated by 182 nucleotidesDsui_2029 and Dsui_2030 are separated by 79 nucleotides Dsui_2027: Dsui_2027 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 2,145,500 to 2,147,065 _2027 Dsui_2028: Dsui_2028 - putative endonuclease containing a URI domain, at 2,147,166 to 2,147,462 _2028 Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565 _2029 Dsui_2030: Dsui_2030 - branched-chain amino acid aminotransferase, group I, at 2,148,645 to 2,149,571 _2030 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -3 -2 -1 0 1at 2146.659 kb on + strandat 2146.750 kb on - strandat 2146.821 kb on + strand, within Dsui_2027at 2146.879 kb on + strandat 2147.004 kb on - strandat 2147.027 kb on + strandat 2147.027 kb on + strandat 2147.323 kb on + strandat 2147.591 kb on - strandat 2147.603 kb on + strandat 2147.604 kb on - strandat 2147.616 kb on - strandat 2147.641 kb on + strandat 2147.658 kb on - strandat 2147.710 kb on - strandat 2147.967 kb on - strand, within Dsui_2029at 2147.967 kb on - strand, within Dsui_2029at 2148.089 kb on - strand, within Dsui_2029at 2148.428 kb on + strandat 2148.535 kb on - strandat 2148.560 kb on + strandat 2148.560 kb on + strandat 2148.678 kb on + strandat 2148.690 kb on + strandat 2148.706 kb on + strandat 2148.746 kb on + strandat 2148.862 kb on - strandat 2148.908 kb on + strand, within Dsui_2030at 2148.955 kb on - strandat 2149.058 kb on + strandat 2149.098 kb on - strand, within Dsui_2030at 2149.098 kb on - strandat 2149.125 kb on - strandat 2149.189 kb on + strandat 2149.235 kb on + strand, within Dsui_2030at 2149.290 kb on + strandat 2149.290 kb on + strand, within Dsui_2030at 2149.312 kb on - strand, within Dsui_2030at 2149.326 kb on - strandat 2149.363 kb on + strandat 2149.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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2,146,659 + +0.7
2,146,750 - +0.7
2,146,821 + Dsui_2027 0.84 -0.9
2,146,879 + -0.3
2,147,004 - -0.3
2,147,027 + +0.7
2,147,027 + -0.9
2,147,323 + +0.7
2,147,591 - +0.7
2,147,603 + -0.9
2,147,604 - -0.9
2,147,616 - -0.3
2,147,641 + -1.6
2,147,658 - -0.9
2,147,710 - -0.9
2,147,967 - Dsui_2029 0.35 -0.9
2,147,967 - Dsui_2029 0.35 -0.3
2,148,089 - Dsui_2029 0.48 -1.3
2,148,428 + +0.7
2,148,535 - -3.2
2,148,560 + -0.9
2,148,560 + -0.3
2,148,678 + -2.1
2,148,690 + -0.3
2,148,706 + +0.7
2,148,746 + -0.3
2,148,862 - +0.7
2,148,908 + Dsui_2030 0.28 -0.3
2,148,955 - -0.3
2,149,058 + +0.7
2,149,098 - Dsui_2030 0.49 -1.6
2,149,098 - -1.3
2,149,125 - +0.7
2,149,189 + -0.3
2,149,235 + Dsui_2030 0.64 -2.3
2,149,290 + +0.7
2,149,290 + Dsui_2030 0.70 -0.8
2,149,312 - Dsui_2030 0.72 -0.3
2,149,326 - -0.3
2,149,363 + +0.7
2,149,495 - -1.3

Or see this region's nucleotide sequence