Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2026 and Dsui_2027 are separated by 17 nucleotides Dsui_2027 and Dsui_2028 are separated by 100 nucleotides Dsui_2028 and Dsui_2029 are separated by 182 nucleotides
Dsui_2026: Dsui_2026 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 2,142,285 to 2,145,482
_2026
Dsui_2027: Dsui_2027 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 2,145,500 to 2,147,065
_2027
Dsui_2028: Dsui_2028 - putative endonuclease containing a URI domain, at 2,147,166 to 2,147,462
_2028
Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565
_2029
Position (kb)
2145
2146
2147
2148 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2144.532 kb on - strand at 2144.572 kb on + strand at 2144.572 kb on + strand, within Dsui_2026 at 2144.572 kb on + strand, within Dsui_2026 at 2144.572 kb on + strand at 2144.621 kb on + strand at 2144.623 kb on - strand at 2144.629 kb on - strand at 2144.696 kb on + strand, within Dsui_2026 at 2144.859 kb on - strand, within Dsui_2026 at 2144.876 kb on + strand at 2144.935 kb on - strand, within Dsui_2026 at 2145.097 kb on + strand, within Dsui_2026 at 2145.176 kb on - strand at 2145.326 kb on + strand at 2145.329 kb on - strand at 2145.343 kb on + strand at 2145.397 kb on + strand at 2145.409 kb on - strand at 2145.471 kb on - strand at 2145.490 kb on + strand at 2145.538 kb on + strand at 2145.633 kb on + strand at 2145.734 kb on + strand at 2145.768 kb on - strand, within Dsui_2027 at 2145.790 kb on + strand, within Dsui_2027 at 2145.798 kb on - strand at 2145.894 kb on - strand at 2146.116 kb on - strand at 2146.130 kb on - strand at 2146.143 kb on + strand at 2146.151 kb on - strand at 2146.199 kb on + strand at 2146.450 kb on + strand, within Dsui_2027 at 2146.541 kb on - strand at 2146.550 kb on + strand, within Dsui_2027 at 2146.625 kb on - strand at 2146.659 kb on + strand at 2146.750 kb on - strand at 2146.821 kb on + strand, within Dsui_2027 at 2146.879 kb on + strand at 2147.004 kb on - strand at 2147.027 kb on + strand at 2147.027 kb on + strand at 2147.323 kb on + strand at 2147.591 kb on - strand at 2147.603 kb on + strand at 2147.604 kb on - strand at 2147.616 kb on - strand at 2147.641 kb on + strand at 2147.658 kb on - strand at 2147.710 kb on - strand at 2147.967 kb on - strand, within Dsui_2029 at 2147.967 kb on - strand, within Dsui_2029
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 2,144,532 - +0.7 2,144,572 + +0.7 2,144,572 + Dsui_2026 0.72 -1.3 2,144,572 + Dsui_2026 0.72 -1.3 2,144,572 + -0.3 2,144,621 + +0.7 2,144,623 - -0.3 2,144,629 - +0.7 2,144,696 + Dsui_2026 0.75 +0.7 2,144,859 - Dsui_2026 0.80 +0.7 2,144,876 + +0.7 2,144,935 - Dsui_2026 0.83 +0.7 2,145,097 + Dsui_2026 0.88 -1.6 2,145,176 - +0.7 2,145,326 + -0.3 2,145,329 - -0.3 2,145,343 + -1.9 2,145,397 + +0.7 2,145,409 - +0.7 2,145,471 - +0.7 2,145,490 + -0.3 2,145,538 + -0.3 2,145,633 + -0.3 2,145,734 + -0.3 2,145,768 - Dsui_2027 0.17 -1.6 2,145,790 + Dsui_2027 0.19 -3.3 2,145,798 - +0.7 2,145,894 - -0.3 2,146,116 - -0.9 2,146,130 - +0.7 2,146,143 + +0.7 2,146,151 - +0.7 2,146,199 + +0.7 2,146,450 + Dsui_2027 0.61 -1.3 2,146,541 - -0.9 2,146,550 + Dsui_2027 0.67 -1.3 2,146,625 - -1.3 2,146,659 + +0.7 2,146,750 - +0.7 2,146,821 + Dsui_2027 0.84 -0.9 2,146,879 + -0.3 2,147,004 - -0.3 2,147,027 + +0.7 2,147,027 + -0.9 2,147,323 + +0.7 2,147,591 - +0.7 2,147,603 + -0.9 2,147,604 - -0.9 2,147,616 - -0.3 2,147,641 + -1.6 2,147,658 - -0.9 2,147,710 - -0.9 2,147,967 - Dsui_2029 0.35 -0.9 2,147,967 - Dsui_2029 0.35 -0.3
Or see this region's nucleotide sequence