Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1846 and Dsui_1847 are separated by 61 nucleotides Dsui_1847 and Dsui_1848 overlap by 17 nucleotides Dsui_1848 and Dsui_1849 are separated by 51 nucleotides Dsui_1849 and Dsui_1850 are separated by 3 nucleotides
Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622
_1846
Dsui_1847: Dsui_1847 - acetyltransferase, N-acetylglutamate synthase, at 1,942,684 to 1,943,136
_1847
Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175
_1848
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Position (kb)
1943
1944
1945 Strain fitness (log2 ratio)
-2
-1
0
1 at 1942.131 kb on + strand, within Dsui_1846 at 1942.162 kb on - strand, within Dsui_1846 at 1942.309 kb on - strand, within Dsui_1846 at 1942.336 kb on + strand, within Dsui_1846 at 1942.391 kb on + strand at 1942.816 kb on + strand at 1942.897 kb on - strand, within Dsui_1847 at 1942.903 kb on - strand at 1942.942 kb on + strand, within Dsui_1847 at 1943.031 kb on + strand at 1943.058 kb on + strand at 1943.058 kb on + strand at 1943.066 kb on - strand, within Dsui_1847 at 1943.097 kb on - strand at 1943.136 kb on + strand at 1943.213 kb on + strand at 1943.299 kb on - strand, within Dsui_1848 at 1943.463 kb on - strand at 1943.608 kb on + strand at 1943.621 kb on - strand at 1943.690 kb on - strand at 1943.695 kb on - strand at 1943.820 kb on + strand at 1943.835 kb on - strand at 1943.974 kb on + strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1944.109 kb on + strand at 1944.145 kb on - strand at 1944.203 kb on - strand at 1944.225 kb on + strand at 1944.238 kb on - strand at 1944.239 kb on - strand at 1944.261 kb on + strand at 1944.261 kb on + strand at 1944.269 kb on - strand at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,942,131 + Dsui_1846 0.58 -1.6 1,942,162 - Dsui_1846 0.60 -1.8 1,942,309 - Dsui_1846 0.73 -0.6 1,942,336 + Dsui_1846 0.75 -0.6 1,942,391 + +0.4 1,942,816 + -1.2 1,942,897 - Dsui_1847 0.47 -1.6 1,942,903 - -0.6 1,942,942 + Dsui_1847 0.57 -0.6 1,943,031 + +0.4 1,943,058 + +0.4 1,943,058 + -0.6 1,943,066 - Dsui_1847 0.84 -2.2 1,943,097 - -0.6 1,943,136 + -1.9 1,943,213 + -1.6 1,943,299 - Dsui_1848 0.17 -1.2 1,943,463 - -1.2 1,943,608 + +0.4 1,943,621 - +0.4 1,943,690 - -0.6 1,943,695 - +0.4 1,943,820 + +0.4 1,943,835 - -0.6 1,943,974 + Dsui_1848 0.81 -0.6 1,943,982 - Dsui_1848 0.82 -1.6 1,943,982 - Dsui_1848 0.82 -0.6 1,944,109 + -0.6 1,944,145 - -0.6 1,944,203 - -1.2 1,944,225 + +0.4 1,944,238 - -1.2 1,944,239 - +0.4 1,944,261 + +0.4 1,944,261 + +0.4 1,944,269 - +0.4 1,944,648 - Dsui_1849 0.88 -1.9 1,944,716 - +0.4 1,944,793 - Dsui_1850 0.22 +0.0 1,944,902 - Dsui_1850 0.50 +0.0 1,944,925 - Dsui_1850 0.56 -0.1 1,944,941 + Dsui_1850 0.60 -1.9 1,944,945 - Dsui_1850 0.61 -0.2 1,944,964 + +0.4 1,944,964 + Dsui_1850 0.66 -1.6 1,944,972 - Dsui_1850 0.68 -0.0
Or see this region's nucleotide sequence