Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1719 and Dsui_1720 are separated by 3 nucleotides Dsui_1720 and Dsui_1721 are separated by 12 nucleotides Dsui_1721 and Dsui_1722 are separated by 178 nucleotides
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214
_1720
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Dsui_1722: Dsui_1722 - flagellar biosynthetic protein FlhB, at 1,812,295 to 1,813,434
_1722
Position (kb)
1810
1811
1812
1813 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1809.249 kb on + strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.257 kb on - strand, within Dsui_1719 at 1809.299 kb on - strand, within Dsui_1719 at 1809.345 kb on + strand at 1809.353 kb on - strand at 1809.395 kb on + strand at 1809.517 kb on + strand, within Dsui_1720 at 1809.587 kb on + strand, within Dsui_1720 at 1809.650 kb on - strand, within Dsui_1720 at 1809.710 kb on - strand, within Dsui_1720 at 1809.865 kb on - strand, within Dsui_1720 at 1809.936 kb on + strand, within Dsui_1720 at 1809.992 kb on - strand, within Dsui_1720 at 1810.062 kb on + strand, within Dsui_1720 at 1810.191 kb on + strand at 1810.275 kb on - strand at 1810.328 kb on + strand at 1810.475 kb on - strand, within Dsui_1721 at 1810.483 kb on + strand, within Dsui_1721 at 1810.486 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.570 kb on - strand, within Dsui_1721 at 1810.818 kb on + strand, within Dsui_1721 at 1811.080 kb on - strand at 1811.099 kb on + strand, within Dsui_1721 at 1811.196 kb on + strand, within Dsui_1721 at 1811.261 kb on - strand, within Dsui_1721 at 1811.298 kb on - strand at 1811.429 kb on + strand, within Dsui_1721 at 1811.437 kb on - strand, within Dsui_1721 at 1811.494 kb on + strand, within Dsui_1721 at 1811.554 kb on + strand, within Dsui_1721 at 1811.568 kb on - strand, within Dsui_1721 at 1811.574 kb on - strand, within Dsui_1721 at 1811.662 kb on + strand, within Dsui_1721 at 1811.721 kb on - strand, within Dsui_1721 at 1811.834 kb on + strand, within Dsui_1721 at 1811.849 kb on - strand, within Dsui_1721 at 1811.905 kb on + strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1812.020 kb on - strand at 1812.055 kb on - strand at 1812.129 kb on + strand at 1812.291 kb on + strand at 1812.349 kb on + strand at 1812.438 kb on - strand, within Dsui_1722 at 1812.461 kb on + strand, within Dsui_1722 at 1812.500 kb on + strand, within Dsui_1722 at 1812.596 kb on + strand, within Dsui_1722 at 1812.625 kb on - strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.674 kb on + strand, within Dsui_1722 at 1812.723 kb on + strand, within Dsui_1722 at 1812.732 kb on + strand, within Dsui_1722 at 1812.740 kb on - strand, within Dsui_1722 at 1812.767 kb on - strand, within Dsui_1722 at 1812.779 kb on + strand, within Dsui_1722 at 1812.796 kb on - strand, within Dsui_1722 at 1812.843 kb on + strand, within Dsui_1722 at 1812.851 kb on - strand, within Dsui_1722 at 1812.950 kb on + strand, within Dsui_1722 at 1813.019 kb on - strand, within Dsui_1722 at 1813.082 kb on - strand, within Dsui_1722
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,809,249 + Dsui_1719 0.76 -0.1 1,809,249 + Dsui_1719 0.76 +0.0 1,809,257 - Dsui_1719 0.78 -1.4 1,809,299 - Dsui_1719 0.88 -3.0 1,809,345 + +0.5 1,809,353 - -0.8 1,809,395 + -0.0 1,809,517 + Dsui_1720 0.19 -0.0 1,809,587 + Dsui_1720 0.28 -0.0 1,809,650 - Dsui_1720 0.35 -2.6 1,809,710 - Dsui_1720 0.42 -2.4 1,809,865 - Dsui_1720 0.60 -1.8 1,809,936 + Dsui_1720 0.68 -0.3 1,809,992 - Dsui_1720 0.74 +0.2 1,810,062 + Dsui_1720 0.82 -0.3 1,810,191 + +0.1 1,810,275 - -3.0 1,810,328 + +0.1 1,810,475 - Dsui_1721 0.13 +0.2 1,810,483 + Dsui_1721 0.14 -0.1 1,810,486 - Dsui_1721 0.14 -1.4 1,810,491 - Dsui_1721 0.14 -1.4 1,810,491 - Dsui_1721 0.14 -2.4 1,810,562 + Dsui_1721 0.18 -0.1 1,810,562 + Dsui_1721 0.18 -0.2 1,810,562 + Dsui_1721 0.18 -0.1 1,810,570 - Dsui_1721 0.18 -1.4 1,810,818 + Dsui_1721 0.31 -0.5 1,811,080 - -1.4 1,811,099 + Dsui_1721 0.46 -0.1 1,811,196 + Dsui_1721 0.51 +0.2 1,811,261 - Dsui_1721 0.55 +0.2 1,811,298 - +0.2 1,811,429 + Dsui_1721 0.64 -0.2 1,811,437 - Dsui_1721 0.64 +0.2 1,811,494 + Dsui_1721 0.67 -0.1 1,811,554 + Dsui_1721 0.70 -0.1 1,811,568 - Dsui_1721 0.71 -1.4 1,811,574 - Dsui_1721 0.71 -0.8 1,811,662 + Dsui_1721 0.76 -0.0 1,811,721 - Dsui_1721 0.79 +0.2 1,811,834 + Dsui_1721 0.85 +0.3 1,811,849 - Dsui_1721 0.86 -2.2 1,811,905 + Dsui_1721 0.89 -0.1 1,811,913 - Dsui_1721 0.89 -0.8 1,811,913 - Dsui_1721 0.89 -1.8 1,812,020 - +0.2 1,812,055 - +0.2 1,812,129 + -0.2 1,812,291 + +0.4 1,812,349 + +0.1 1,812,438 - Dsui_1722 0.13 +1.2 1,812,461 + Dsui_1722 0.15 +0.0 1,812,500 + Dsui_1722 0.18 +0.0 1,812,596 + Dsui_1722 0.26 -0.1 1,812,625 - Dsui_1722 0.29 +0.2 1,812,664 + Dsui_1722 0.32 -0.0 1,812,664 + Dsui_1722 0.32 -0.1 1,812,674 + Dsui_1722 0.33 +0.1 1,812,723 + Dsui_1722 0.38 +0.2 1,812,732 + Dsui_1722 0.38 +0.0 1,812,740 - Dsui_1722 0.39 -1.4 1,812,767 - Dsui_1722 0.41 -1.6 1,812,779 + Dsui_1722 0.42 +0.1 1,812,796 - Dsui_1722 0.44 +0.2 1,812,843 + Dsui_1722 0.48 +0.3 1,812,851 - Dsui_1722 0.49 +0.2 1,812,950 + Dsui_1722 0.57 +0.2 1,813,019 - Dsui_1722 0.64 +0.2 1,813,082 - Dsui_1722 0.69 -0.8
Or see this region's nucleotide sequence