Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1702 and Dsui_1703 are separated by 14 nucleotides Dsui_1703 and Dsui_1704 are separated by 275 nucleotides Dsui_1704 and Dsui_1705 are separated by 30 nucleotides
Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039
_1702
Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602
_1703
Dsui_1704: Dsui_1704 - flagellar motor stator protein MotA, at 1,790,878 to 1,791,735
_1704
Dsui_1705: Dsui_1705 - flagellar motor protein, at 1,791,766 to 1,792,713
_1705
Position (kb)
1790
1791
1792 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1789.885 kb on - strand, within Dsui_1702 at 1789.973 kb on + strand at 1790.028 kb on - strand at 1790.083 kb on + strand at 1790.083 kb on + strand at 1790.083 kb on + strand at 1790.091 kb on - strand at 1790.091 kb on - strand at 1790.091 kb on - strand at 1790.093 kb on + strand at 1790.102 kb on + strand at 1790.106 kb on - strand at 1790.175 kb on - strand, within Dsui_1703 at 1790.221 kb on + strand, within Dsui_1703 at 1790.264 kb on + strand, within Dsui_1703 at 1790.282 kb on - strand, within Dsui_1703 at 1790.283 kb on - strand, within Dsui_1703 at 1790.341 kb on - strand, within Dsui_1703 at 1790.346 kb on - strand, within Dsui_1703 at 1790.433 kb on - strand, within Dsui_1703 at 1790.449 kb on - strand, within Dsui_1703 at 1790.493 kb on + strand, within Dsui_1703 at 1790.507 kb on - strand, within Dsui_1703 at 1790.592 kb on + strand at 1790.595 kb on - strand at 1790.610 kb on + strand at 1790.610 kb on + strand at 1790.613 kb on + strand at 1790.616 kb on - strand at 1790.618 kb on - strand at 1790.679 kb on - strand at 1790.683 kb on + strand at 1790.685 kb on + strand at 1790.692 kb on - strand at 1790.778 kb on - strand at 1790.801 kb on + strand at 1790.854 kb on + strand at 1790.861 kb on + strand at 1790.863 kb on + strand at 1791.023 kb on + strand, within Dsui_1704 at 1791.094 kb on - strand, within Dsui_1704 at 1791.106 kb on - strand at 1791.254 kb on + strand, within Dsui_1704 at 1791.273 kb on + strand, within Dsui_1704 at 1791.285 kb on + strand, within Dsui_1704 at 1791.293 kb on + strand, within Dsui_1704 at 1791.359 kb on - strand, within Dsui_1704 at 1791.451 kb on - strand, within Dsui_1704 at 1791.456 kb on - strand, within Dsui_1704 at 1791.550 kb on - strand, within Dsui_1704 at 1791.582 kb on - strand, within Dsui_1704 at 1791.719 kb on - strand at 1791.760 kb on + strand at 1791.768 kb on - strand at 1791.836 kb on - strand at 1792.011 kb on + strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.056 kb on + strand, within Dsui_1705 at 1792.218 kb on + strand, within Dsui_1705 at 1792.257 kb on + strand, within Dsui_1705 at 1792.290 kb on + strand, within Dsui_1705 at 1792.290 kb on + strand, within Dsui_1705 at 1792.298 kb on - strand, within Dsui_1705 at 1792.464 kb on + strand, within Dsui_1705 at 1792.483 kb on - strand, within Dsui_1705 at 1792.483 kb on - strand at 1792.512 kb on + strand, within Dsui_1705 at 1792.520 kb on - strand, within Dsui_1705 at 1792.587 kb on - strand, within Dsui_1705 at 1792.686 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,789,885 - Dsui_1702 0.79 +0.1 1,789,973 + +0.1 1,790,028 - +0.2 1,790,083 + -0.9 1,790,083 + -0.9 1,790,083 + +0.1 1,790,091 - +0.0 1,790,091 - +0.2 1,790,091 - +0.1 1,790,093 + -2.2 1,790,102 + -1.9 1,790,106 - -0.1 1,790,175 - Dsui_1703 0.22 -0.0 1,790,221 + Dsui_1703 0.30 -2.9 1,790,264 + Dsui_1703 0.38 +0.1 1,790,282 - Dsui_1703 0.42 +0.5 1,790,283 - Dsui_1703 0.42 +0.1 1,790,341 - Dsui_1703 0.52 -0.2 1,790,346 - Dsui_1703 0.53 +0.1 1,790,433 - Dsui_1703 0.69 +0.7 1,790,449 - Dsui_1703 0.72 -0.1 1,790,493 + Dsui_1703 0.80 -2.2 1,790,507 - Dsui_1703 0.83 +0.1 1,790,592 + +0.1 1,790,595 - -0.2 1,790,610 + -2.7 1,790,610 + +0.1 1,790,613 + -0.9 1,790,616 - +0.6 1,790,618 - +0.4 1,790,679 - -0.9 1,790,683 + +0.1 1,790,685 + -1.9 1,790,692 - -0.9 1,790,778 - -0.9 1,790,801 + -0.2 1,790,854 + +0.0 1,790,861 + -0.0 1,790,863 + -0.1 1,791,023 + Dsui_1704 0.17 -0.1 1,791,094 - Dsui_1704 0.25 -0.9 1,791,106 - +0.1 1,791,254 + Dsui_1704 0.44 -0.2 1,791,273 + Dsui_1704 0.46 -0.0 1,791,285 + Dsui_1704 0.47 +0.1 1,791,293 + Dsui_1704 0.48 -0.8 1,791,359 - Dsui_1704 0.56 -0.9 1,791,451 - Dsui_1704 0.67 -3.3 1,791,456 - Dsui_1704 0.67 +0.1 1,791,550 - Dsui_1704 0.78 -0.9 1,791,582 - Dsui_1704 0.82 -2.7 1,791,719 - -1.4 1,791,760 + -0.1 1,791,768 - -2.7 1,791,836 - +0.2 1,792,011 + Dsui_1705 0.26 +0.2 1,792,033 - Dsui_1705 0.28 -4.0 1,792,033 - Dsui_1705 0.28 -0.8 1,792,033 - Dsui_1705 0.28 +0.2 1,792,056 + Dsui_1705 0.31 -0.2 1,792,218 + Dsui_1705 0.48 -0.2 1,792,257 + Dsui_1705 0.52 +0.0 1,792,290 + Dsui_1705 0.55 -0.3 1,792,290 + Dsui_1705 0.55 -0.2 1,792,298 - Dsui_1705 0.56 -1.4 1,792,464 + Dsui_1705 0.74 -0.1 1,792,483 - Dsui_1705 0.76 +0.2 1,792,483 - -0.8 1,792,512 + Dsui_1705 0.79 -0.4 1,792,520 - Dsui_1705 0.80 -0.8 1,792,587 - Dsui_1705 0.87 +0.2 1,792,686 + -0.1
Or see this region's nucleotide sequence