Strain Fitness in Dechlorosoma suillum PS around Dsui_1674

Experiment: ALP with Bacitracin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1672 and Dsui_1673 overlap by 1 nucleotidesDsui_1673 and Dsui_1674 are separated by 1 nucleotidesDsui_1674 and Dsui_1675 are separated by 4 nucleotidesDsui_1675 and Dsui_1676 are separated by 79 nucleotidesDsui_1676 and Dsui_1677 are separated by 50 nucleotides Dsui_1672: Dsui_1672 - Fe2+-dicitrate sensor, membrane component, at 1,759,562 to 1,760,494 _1672 Dsui_1673: Dsui_1673 - RNA polymerase sigma factor, sigma-70 family, at 1,760,494 to 1,761,000 _1673 Dsui_1674: Dsui_1674 - EAL domain-containing protein, at 1,761,002 to 1,761,721 _1674 Dsui_1675: Dsui_1675 - hypothetical protein, at 1,761,726 to 1,762,052 _1675 Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623 _1676 Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291 _1677 Position (kb) 1761 1762Strain fitness (log2 ratio) -3 -2 -1 0 1at 1760.430 kb on + strandat 1760.465 kb on - strandat 1760.604 kb on - strand, within Dsui_1673at 1760.891 kb on + strand, within Dsui_1673at 1760.896 kb on + strand, within Dsui_1673at 1760.904 kb on - strand, within Dsui_1673at 1761.000 kb on + strandat 1761.104 kb on + strand, within Dsui_1674at 1761.147 kb on + strand, within Dsui_1674at 1761.163 kb on - strandat 1761.195 kb on + strandat 1761.204 kb on - strand, within Dsui_1674at 1761.400 kb on + strandat 1761.478 kb on - strand, within Dsui_1674at 1761.525 kb on + strand, within Dsui_1674at 1761.608 kb on - strand, within Dsui_1674at 1761.716 kb on - strandat 1761.747 kb on + strandat 1761.774 kb on - strandat 1761.807 kb on - strandat 1761.874 kb on - strand, within Dsui_1675at 1761.885 kb on - strand, within Dsui_1675at 1761.924 kb on - strand, within Dsui_1675at 1761.932 kb on + strand, within Dsui_1675at 1762.048 kb on - strandat 1762.089 kb on + strandat 1762.110 kb on + strandat 1762.129 kb on + strandat 1762.164 kb on - strandat 1762.257 kb on - strand, within Dsui_1676at 1762.268 kb on + strandat 1762.401 kb on + strandat 1762.409 kb on - strand, within Dsui_1676at 1762.416 kb on + strand, within Dsui_1676at 1762.417 kb on - strand, within Dsui_1676at 1762.424 kb on - strand, within Dsui_1676at 1762.524 kb on + strand, within Dsui_1676at 1762.524 kb on + strandat 1762.532 kb on - strand, within Dsui_1676at 1762.557 kb on + strandat 1762.560 kb on - strand, within Dsui_1676at 1762.565 kb on - strand, within Dsui_1676at 1762.589 kb on + strandat 1762.705 kb on - strandat 1762.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml
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1,760,430 + +0.1
1,760,465 - -1.9
1,760,604 - Dsui_1673 0.22 +0.1
1,760,891 + Dsui_1673 0.78 -0.9
1,760,896 + Dsui_1673 0.79 -1.5
1,760,904 - Dsui_1673 0.81 -1.9
1,761,000 + -0.9
1,761,104 + Dsui_1674 0.14 -2.3
1,761,147 + Dsui_1674 0.20 -1.5
1,761,163 - -1.5
1,761,195 + +0.1
1,761,204 - Dsui_1674 0.28 -0.9
1,761,400 + +0.1
1,761,478 - Dsui_1674 0.66 -3.7
1,761,525 + Dsui_1674 0.73 -2.3
1,761,608 - Dsui_1674 0.84 -2.3
1,761,716 - -1.5
1,761,747 + +0.1
1,761,774 - +0.1
1,761,807 - +0.1
1,761,874 - Dsui_1675 0.45 -2.5
1,761,885 - Dsui_1675 0.49 -1.9
1,761,924 - Dsui_1675 0.61 +0.1
1,761,932 + Dsui_1675 0.63 -0.9
1,762,048 - +0.1
1,762,089 + -0.9
1,762,110 + -1.9
1,762,129 + -0.9
1,762,164 - -2.2
1,762,257 - Dsui_1676 0.25 +0.1
1,762,268 + +0.1
1,762,401 + -0.9
1,762,409 - Dsui_1676 0.56 +0.1
1,762,416 + Dsui_1676 0.58 -1.9
1,762,417 - Dsui_1676 0.58 -1.9
1,762,424 - Dsui_1676 0.59 -1.9
1,762,524 + Dsui_1676 0.80 -1.5
1,762,524 + +0.1
1,762,532 - Dsui_1676 0.81 -1.5
1,762,557 + +0.1
1,762,560 - Dsui_1676 0.87 -0.9
1,762,565 - Dsui_1676 0.88 -0.9
1,762,589 + +0.1
1,762,705 - +0.1
1,762,721 - +0.1

Or see this region's nucleotide sequence