Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1569 and Dsui_1570 are separated by 57 nucleotides Dsui_1570 and Dsui_1571 are separated by 99 nucleotides Dsui_1571 and Dsui_1572 are separated by 83 nucleotides
Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029
_1569
Dsui_1570: Dsui_1570 - amino-acid N-acetyltransferase, at 1,643,087 to 1,644,433
_1570
Dsui_1571: Dsui_1571 - Fe-S cluster protector protein, at 1,644,533 to 1,644,805
_1571
Dsui_1572: Dsui_1572 - hypothetical protein, at 1,644,889 to 1,645,296
_1572
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1642.138 kb on + strand, within Dsui_1569 at 1642.246 kb on + strand, within Dsui_1569 at 1642.289 kb on + strand, within Dsui_1569 at 1642.291 kb on - strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.381 kb on + strand, within Dsui_1569 at 1642.383 kb on + strand, within Dsui_1569 at 1642.484 kb on - strand, within Dsui_1569 at 1642.719 kb on + strand, within Dsui_1569 at 1642.781 kb on - strand, within Dsui_1569 at 1643.034 kb on + strand at 1644.412 kb on + strand at 1644.477 kb on + strand at 1644.490 kb on - strand at 1644.775 kb on + strand, within Dsui_1571 at 1644.775 kb on + strand, within Dsui_1571 at 1644.783 kb on - strand at 1644.783 kb on - strand at 1644.789 kb on - strand at 1644.794 kb on + strand at 1644.921 kb on + strand at 1645.013 kb on - strand, within Dsui_1572 at 1645.071 kb on + strand, within Dsui_1572 at 1645.071 kb on + strand, within Dsui_1572 at 1645.129 kb on - strand, within Dsui_1572 at 1645.186 kb on + strand, within Dsui_1572 at 1645.194 kb on - strand at 1645.216 kb on - strand, within Dsui_1572 at 1645.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,642,138 + Dsui_1569 0.41 -1.7 1,642,246 + Dsui_1569 0.48 +0.3 1,642,289 + Dsui_1569 0.51 -2.9 1,642,291 - Dsui_1569 0.51 -3.1 1,642,312 + Dsui_1569 0.52 -1.1 1,642,312 + Dsui_1569 0.52 -0.8 1,642,312 + Dsui_1569 0.52 +0.1 1,642,381 + Dsui_1569 0.57 -1.4 1,642,383 + Dsui_1569 0.57 -0.5 1,642,484 - Dsui_1569 0.64 +0.1 1,642,719 + Dsui_1569 0.79 -3.8 1,642,781 - Dsui_1569 0.83 -1.5 1,643,034 + +0.6 1,644,412 + -0.3 1,644,477 + -0.4 1,644,490 - -2.8 1,644,775 + Dsui_1571 0.89 -0.1 1,644,775 + Dsui_1571 0.89 -0.2 1,644,783 - +0.1 1,644,783 - -2.5 1,644,789 - +0.1 1,644,794 + -0.3 1,644,921 + -1.1 1,645,013 - Dsui_1572 0.30 -2.8 1,645,071 + Dsui_1572 0.45 -0.3 1,645,071 + Dsui_1572 0.45 -0.7 1,645,129 - Dsui_1572 0.59 -2.3 1,645,186 + Dsui_1572 0.73 -1.5 1,645,194 - +0.1 1,645,216 - Dsui_1572 0.80 +0.1 1,645,408 + -2.3
Or see this region's nucleotide sequence