Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1367 and Dsui_1368 are separated by 8 nucleotides Dsui_1368 and Dsui_1369 are separated by 50 nucleotides Dsui_1369 and Dsui_1370 are separated by 141 nucleotides
Dsui_1367: Dsui_1367 - crcB protein, at 1,421,632 to 1,422,021
_1367
Dsui_1368: Dsui_1368 - hypothetical protein, at 1,422,030 to 1,422,866
_1368
Dsui_1369: Dsui_1369 - hypothetical protein, at 1,422,917 to 1,423,207
_1369
Dsui_1370: Dsui_1370 - putative permease, DMT superfamily, at 1,423,349 to 1,424,251
_1370
Position (kb) 1422
1423
1424 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1421.947 kb on - strand, within Dsui_1367 at 1422.015 kb on + strand at 1422.092 kb on - strand at 1422.103 kb on - strand at 1422.110 kb on - strand at 1422.152 kb on + strand, within Dsui_1368 at 1422.171 kb on - strand at 1422.175 kb on - strand at 1422.191 kb on - strand, within Dsui_1368 at 1422.217 kb on - strand, within Dsui_1368 at 1422.225 kb on - strand, within Dsui_1368 at 1422.239 kb on + strand, within Dsui_1368 at 1422.247 kb on - strand, within Dsui_1368 at 1422.350 kb on - strand at 1422.453 kb on + strand, within Dsui_1368 at 1422.466 kb on - strand, within Dsui_1368 at 1422.569 kb on + strand at 1422.569 kb on + strand, within Dsui_1368 at 1422.667 kb on - strand at 1422.713 kb on - strand at 1422.715 kb on + strand at 1422.743 kb on + strand, within Dsui_1368 at 1422.743 kb on + strand, within Dsui_1368 at 1422.751 kb on - strand at 1422.804 kb on + strand at 1422.812 kb on - strand at 1422.827 kb on + strand at 1422.904 kb on - strand at 1422.929 kb on + strand at 1423.056 kb on + strand at 1423.086 kb on + strand, within Dsui_1369 at 1423.108 kb on + strand, within Dsui_1369 at 1423.115 kb on + strand at 1423.116 kb on - strand, within Dsui_1369 at 1423.116 kb on - strand at 1423.169 kb on + strand at 1423.202 kb on + strand at 1423.217 kb on - strand at 1423.224 kb on - strand at 1423.297 kb on + strand at 1423.369 kb on + strand at 1423.472 kb on - strand at 1423.496 kb on + strand, within Dsui_1370 at 1423.557 kb on + strand at 1423.565 kb on - strand, within Dsui_1370 at 1423.569 kb on - strand, within Dsui_1370 at 1423.613 kb on - strand, within Dsui_1370 at 1423.641 kb on - strand, within Dsui_1370 at 1423.772 kb on - strand at 1423.828 kb on - strand at 1423.943 kb on + strand, within Dsui_1370 at 1423.953 kb on + strand, within Dsui_1370 at 1423.966 kb on - strand, within Dsui_1370 at 1423.971 kb on - strand, within Dsui_1370 at 1424.107 kb on + strand, within Dsui_1370 at 1424.135 kb on + strand at 1424.156 kb on - strand at 1424.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,421,947 - Dsui_1367 0.81 -2.3 1,422,015 + -1.0 1,422,092 - -0.0 1,422,103 - -0.0 1,422,110 - -1.0 1,422,152 + Dsui_1368 0.15 -4.0 1,422,171 - -1.0 1,422,175 - -1.6 1,422,191 - Dsui_1368 0.19 -1.0 1,422,217 - Dsui_1368 0.22 -1.6 1,422,225 - Dsui_1368 0.23 -1.6 1,422,239 + Dsui_1368 0.25 -3.0 1,422,247 - Dsui_1368 0.26 -2.6 1,422,350 - +0.0 1,422,453 + Dsui_1368 0.51 -1.6 1,422,466 - Dsui_1368 0.52 -1.6 1,422,569 + -1.0 1,422,569 + Dsui_1368 0.64 -1.6 1,422,667 - +0.0 1,422,713 - +0.0 1,422,715 + +0.0 1,422,743 + Dsui_1368 0.85 +0.0 1,422,743 + Dsui_1368 0.85 +0.0 1,422,751 - +0.0 1,422,804 + -2.0 1,422,812 - -1.0 1,422,827 + +0.0 1,422,904 - -1.0 1,422,929 + +0.0 1,423,056 + +0.0 1,423,086 + Dsui_1369 0.58 -1.0 1,423,108 + Dsui_1369 0.66 +0.0 1,423,115 + -2.3 1,423,116 - Dsui_1369 0.68 -2.0 1,423,116 - -1.0 1,423,169 + -1.0 1,423,202 + -1.6 1,423,217 - -1.0 1,423,224 - -3.0 1,423,297 + +0.0 1,423,369 + -1.6 1,423,472 - +0.0 1,423,496 + Dsui_1370 0.16 -1.6 1,423,557 + +0.0 1,423,565 - Dsui_1370 0.24 -2.8 1,423,569 - Dsui_1370 0.24 -1.6 1,423,613 - Dsui_1370 0.29 +0.0 1,423,641 - Dsui_1370 0.32 +0.0 1,423,772 - +0.0 1,423,828 - -1.0 1,423,943 + Dsui_1370 0.66 -2.0 1,423,953 + Dsui_1370 0.67 -1.6 1,423,966 - Dsui_1370 0.68 -2.3 1,423,971 - Dsui_1370 0.69 -2.0 1,424,107 + Dsui_1370 0.84 -1.0 1,424,135 + +0.0 1,424,156 - -1.0 1,424,164 + +0.0
Or see this region's nucleotide sequence