Experiment: ALP with Bacitracin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1348 and Dsui_1349 are separated by 50 nucleotides Dsui_1349 and Dsui_1350 are separated by 135 nucleotides Dsui_1350 and Dsui_1351 are separated by 184 nucleotides Dsui_1351 and Dsui_1352 are separated by 83 nucleotides Dsui_1352 and Dsui_1353 are separated by 324 nucleotides
Dsui_1348: Dsui_1348 - hemerythrin-like metal-binding domain-containing protein, at 1,404,962 to 1,405,372
_1348
Dsui_1349: Dsui_1349 - hypothetical protein, at 1,405,423 to 1,405,632
_1349
Dsui_1350: Dsui_1350 - hypothetical protein, at 1,405,768 to 1,405,977
_1350
Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087
_1351
Dsui_1352: Dsui_1352 - acyl dehydratase, at 1,408,171 to 1,408,602
_1352
Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817
_1353
Position (kb)
1406
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1405.204 kb on - strand, within Dsui_1348 at 1405.208 kb on + strand, within Dsui_1348 at 1405.290 kb on + strand, within Dsui_1348 at 1405.321 kb on + strand, within Dsui_1348 at 1405.342 kb on + strand at 1405.456 kb on + strand, within Dsui_1349 at 1405.492 kb on - strand, within Dsui_1349 at 1405.494 kb on + strand, within Dsui_1349 at 1405.530 kb on + strand, within Dsui_1349 at 1405.565 kb on - strand, within Dsui_1349 at 1405.573 kb on + strand, within Dsui_1349 at 1405.676 kb on + strand at 1405.740 kb on + strand at 1405.740 kb on + strand at 1405.762 kb on + strand at 1405.763 kb on + strand at 1405.770 kb on - strand at 1405.771 kb on - strand at 1405.818 kb on - strand at 1405.881 kb on - strand, within Dsui_1350 at 1405.989 kb on - strand at 1406.075 kb on + strand at 1406.112 kb on + strand at 1406.117 kb on + strand at 1406.119 kb on - strand at 1406.127 kb on + strand at 1406.127 kb on + strand at 1406.174 kb on + strand at 1406.432 kb on + strand, within Dsui_1351 at 1406.432 kb on + strand, within Dsui_1351 at 1406.753 kb on + strand, within Dsui_1351 at 1406.788 kb on + strand, within Dsui_1351 at 1406.817 kb on - strand at 1406.832 kb on + strand, within Dsui_1351 at 1406.869 kb on + strand, within Dsui_1351 at 1407.015 kb on - strand at 1407.354 kb on + strand, within Dsui_1351 at 1407.495 kb on + strand, within Dsui_1351 at 1407.498 kb on - strand, within Dsui_1351 at 1407.522 kb on + strand, within Dsui_1351 at 1407.759 kb on + strand, within Dsui_1351 at 1407.768 kb on + strand, within Dsui_1351 at 1407.789 kb on + strand, within Dsui_1351 at 1407.817 kb on + strand, within Dsui_1351 at 1407.976 kb on - strand at 1408.088 kb on + strand at 1408.328 kb on + strand, within Dsui_1352 at 1408.361 kb on - strand, within Dsui_1352 at 1408.479 kb on + strand, within Dsui_1352 at 1408.481 kb on + strand, within Dsui_1352 at 1408.487 kb on - strand, within Dsui_1352 at 1408.489 kb on - strand, within Dsui_1352 at 1408.569 kb on + strand at 1408.675 kb on + strand at 1408.836 kb on + strand at 1408.921 kb on + strand at 1409.000 kb on + strand at 1409.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Bacitracin 0.2 mg/ml remove 1,405,204 - Dsui_1348 0.59 -0.0 1,405,208 + Dsui_1348 0.60 -1.6 1,405,290 + Dsui_1348 0.80 -0.6 1,405,321 + Dsui_1348 0.87 -1.2 1,405,342 + -0.6 1,405,456 + Dsui_1349 0.16 -0.0 1,405,492 - Dsui_1349 0.33 -0.0 1,405,494 + Dsui_1349 0.34 -1.0 1,405,530 + Dsui_1349 0.51 -1.6 1,405,565 - Dsui_1349 0.68 -2.8 1,405,573 + Dsui_1349 0.71 -1.0 1,405,676 + -2.0 1,405,740 + -0.3 1,405,740 + -0.3 1,405,762 + -0.3 1,405,763 + -0.5 1,405,770 - -1.6 1,405,771 - -1.6 1,405,818 - -0.0 1,405,881 - Dsui_1350 0.54 -0.0 1,405,989 - -1.0 1,406,075 + +0.0 1,406,112 + -0.7 1,406,117 + -0.7 1,406,119 - -1.6 1,406,127 + -0.4 1,406,127 + -1.0 1,406,174 + -1.7 1,406,432 + Dsui_1351 0.14 -1.9 1,406,432 + Dsui_1351 0.14 -2.3 1,406,753 + Dsui_1351 0.31 -2.6 1,406,788 + Dsui_1351 0.33 -1.5 1,406,817 - -1.6 1,406,832 + Dsui_1351 0.35 -2.2 1,406,869 + Dsui_1351 0.37 -1.4 1,407,015 - -0.0 1,407,354 + Dsui_1351 0.62 -1.1 1,407,495 + Dsui_1351 0.69 -1.0 1,407,498 - Dsui_1351 0.69 -0.0 1,407,522 + Dsui_1351 0.71 -0.7 1,407,759 + Dsui_1351 0.83 -0.8 1,407,768 + Dsui_1351 0.83 -0.6 1,407,789 + Dsui_1351 0.84 -0.5 1,407,817 + Dsui_1351 0.86 -0.7 1,407,976 - -1.6 1,408,088 + -0.3 1,408,328 + Dsui_1352 0.36 -0.0 1,408,361 - Dsui_1352 0.44 -2.4 1,408,479 + Dsui_1352 0.71 -1.0 1,408,481 + Dsui_1352 0.72 -0.0 1,408,487 - Dsui_1352 0.73 -1.3 1,408,489 - Dsui_1352 0.74 -1.6 1,408,569 + -1.6 1,408,675 + -2.0 1,408,836 + -0.0 1,408,921 + -2.0 1,409,000 + -2.6 1,409,008 - -0.0
Or see this region's nucleotide sequence